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    APC APC regulator of WNT signaling pathway [ Bos taurus (domestic cattle) ]

    Gene ID: 533233, updated on 27-Dec-2024

    Summary

    Official Symbol
    APCprovided by VGNC
    Official Full Name
    APC regulator of WNT signaling pathwayprovided by VGNC
    Primary source
    VGNC:VGNC:55103
    See related
    BGD:BT18786; Ensembl:ENSBTAG00000018852
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See APC in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (1167671..1299376, complement)

    Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132346321 Neighboring gene signal recognition particle 19 Neighboring gene erythrocyte membrane protein band 4.1 like 4A Neighboring gene small nucleolar RNA SNORA13

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC140121

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-catenin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables gamma-catenin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in negative regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in negative regulation of microtubule depolymerization IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in pattern specification process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in positive regulation of protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in regulation of cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of beta-catenin destruction complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in cytoplasmic microtubule IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    adenomatous polyposis coli protein
    Names
    APC, WNT signaling pathway regulator
    adenomatosis polyposis coli

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075986.2NP_001069454.2  adenomatous polyposis coli protein

      See identical proteins and their annotated locations for NP_001069454.2

      Status: VALIDATED

      Source sequence(s)
      AAFC03000697, AAFC03020263
      UniProtKB/TrEMBL
      A0A3Q1LMC7
      Related
      ENSBTAP00000057792.2, ENSBTAT00000086393.2
      Conserved Domains (17) summary
      smart00185
      Location:649689
      ARM; Armadillo/beta-catenin-like repeats
      pfam00514
      Location:691731
      Arm; Armadillo/beta-catenin-like repeat
      pfam16689
      Location:455
      APC_N_CC; Coiled-coil N-terminus of APC, dimerisation domain
      sd00043
      Location:465508
      ARM; armadillo repeat [structural motif]
      pfam05923
      Location:16431666
      APC_r; APC repeat
      pfam05924
      Location:20402059
      SAMP; SAMP Motif
      pfam05937
      Location:26772851
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:22302575
      APC_basic; APC basic domain
      pfam11414
      Location:127207
      Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
      pfam16629
      Location:7321018
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:10361135
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:12851370
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:16681721
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:17521845
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:18791953
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      cl21727
      Location:563734
      VATPase_H; VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The ...
      cl25732
      Location:14262
      SMC_N; RecF/RecN/SMC N terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      1167671..1299376 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005211202.5XP_005211259.1  adenomatous polyposis coli protein isoform X12

      UniProtKB/TrEMBL
      A0A3Q1LPA1
      Conserved Domains (13) summary
      cd00020
      Location:520640
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam05923
      Location:15521576
      APC_crr; APC cysteine-rich region
      pfam05924
      Location:19501969
      SAMP; SAMP Motif
      pfam05937
      Location:25862760
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:21392484
      APC_basic; APC basic domain
      pfam11414
      Location:137217
      Suppressor_APC; Adenomatous polyposis coli tumour suppressor protein
      pfam16629
      Location:641928
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:9451044
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:11941279
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:15771633
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:16541754
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:17911862
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      sd00043
      Location:374417
      ARM; armadillo repeat [structural motif]
    2. XM_005211196.5XP_005211253.1  adenomatous polyposis coli protein isoform X7

      UniProtKB/TrEMBL
      A0A3Q1LPA1, A0A3Q1MUQ9
      Related
      ENSBTAP00000074371.1, ENSBTAT00000072901.2
      Conserved Domains (13) summary
      cd00020
      Location:621741
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam05923
      Location:16531677
      APC_crr; APC cysteine-rich region
      pfam05924
      Location:20512070
      SAMP; SAMP Motif
      pfam05937
      Location:26872861
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:22402585
      APC_basic; APC basic domain
      pfam11414
      Location:137217
      Suppressor_APC; Adenomatous polyposis coli tumour suppressor protein
      pfam16629
      Location:7421029
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:10461145
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:12951380
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:16781734
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:17551855
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:18921963
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      sd00043
      Location:475518
      ARM; armadillo repeat [structural motif]
    3. XM_010808816.4XP_010807118.1  adenomatous polyposis coli protein isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LPA1
      Conserved Domains (13) summary
      cd00020
      Location:639759
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam05923
      Location:16711695
      APC_crr; APC cysteine-rich region
      pfam05924
      Location:20692088
      SAMP; SAMP Motif
      pfam05937
      Location:27052879
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:22582603
      APC_basic; APC basic domain
      pfam11414
      Location:137217
      Suppressor_APC; Adenomatous polyposis coli tumour suppressor protein
      pfam16629
      Location:7601047
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:10641163
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:13131398
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:16961752
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:17731873
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:19101981
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      sd00043
      Location:591623
      ARM; armadillo repeat [structural motif]
    4. XM_059890492.1XP_059746475.1  adenomatous polyposis coli protein isoform X10

      UniProtKB/TrEMBL
      A0A3Q1LMC7
    5. XM_015472986.3XP_015328472.1  adenomatous polyposis coli protein isoform X9

      UniProtKB/TrEMBL
      A0A3Q1LMC7
      Conserved Domains (13) summary
      cd00020
      Location:571691
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam05923
      Location:16031627
      APC_crr; APC cysteine-rich region
      pfam05924
      Location:20012020
      SAMP; SAMP Motif
      pfam05937
      Location:26372811
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:21902535
      APC_basic; APC basic domain
      pfam11414
      Location:137217
      Suppressor_APC; Adenomatous polyposis coli tumour suppressor protein
      pfam16629
      Location:692979
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:9961095
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:12451330
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:16281684
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:17051805
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:18421913
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      sd00043
      Location:523555
      ARM; armadillo repeat [structural motif]
    6. XM_015472983.3XP_015328469.1  adenomatous polyposis coli protein isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LMC7
      Conserved Domains (13) summary
      cd00020
      Location:654774
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam05923
      Location:16861710
      APC_crr; APC cysteine-rich region
      pfam05924
      Location:20842103
      SAMP; SAMP Motif
      pfam05937
      Location:27202894
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:22732618
      APC_basic; APC basic domain
      pfam11414
      Location:137217
      Suppressor_APC; Adenomatous polyposis coli tumour suppressor protein
      pfam16629
      Location:7751062
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:10791178
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:13281413
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:17111767
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:17881888
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:19251996
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      sd00043
      Location:508551
      ARM; armadillo repeat [structural motif]
    7. XM_015472979.3XP_015328465.1  adenomatous polyposis coli protein isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LMC7
      Conserved Domains (13) summary
      cd00020
      Location:672792
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam05923
      Location:17041728
      APC_crr; APC cysteine-rich region
      pfam05924
      Location:21022121
      SAMP; SAMP Motif
      pfam05937
      Location:27382912
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:22912636
      APC_basic; APC basic domain
      pfam11414
      Location:137217
      Suppressor_APC; Adenomatous polyposis coli tumour suppressor protein
      pfam16629
      Location:7931080
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:10971196
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:13461431
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:17291785
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:18061906
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:19432014
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      sd00043
      Location:624656
      ARM; armadillo repeat [structural motif]
    8. XM_059890489.1XP_059746472.1  adenomatous polyposis coli protein isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LMC7
    9. XM_059890494.1XP_059746477.1  adenomatous polyposis coli protein isoform X13

      UniProtKB/TrEMBL
      A0A3Q1LMC7
    10. XM_059890493.1XP_059746476.1  adenomatous polyposis coli protein isoform X11

      UniProtKB/TrEMBL
      A0A3Q1LMC7
    11. XM_024997641.2XP_024853409.1  adenomatous polyposis coli protein isoform X8

      UniProtKB/TrEMBL
      A0A3Q1LMC7
      Related
      ENSBTAP00000061149.2, ENSBTAT00000070251.2
      Conserved Domains (17) summary
      smart00185
      Location:649689
      ARM; Armadillo/beta-catenin-like repeats
      pfam00514
      Location:691731
      Arm; Armadillo/beta-catenin-like repeat
      pfam16689
      Location:455
      APC_N_CC; Coiled-coil N-terminus of APC, dimerisation domain
      sd00043
      Location:465508
      ARM; armadillo repeat [structural motif]
      pfam05923
      Location:16431666
      APC_r; APC repeat
      pfam05924
      Location:20402059
      SAMP; SAMP Motif
      pfam05937
      Location:26772851
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:22302575
      APC_basic; APC basic domain
      pfam11414
      Location:127207
      Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
      pfam16629
      Location:7321018
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:10361135
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:12851370
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:16681721
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:17521845
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:18791953
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      cl21727
      Location:563734
      VATPase_H; VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The ...
      cl25732
      Location:14262
      SMC_N; RecF/RecN/SMC N terminal domain
    12. XM_059890490.1XP_059746473.1  adenomatous polyposis coli protein isoform X6

      UniProtKB/TrEMBL
      A0A3Q1LMC7, F1MV51
      Related
      ENSBTAP00000025099.6, ENSBTAT00000025099.7
    13. XM_015472981.3XP_015328467.1  adenomatous polyposis coli protein isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LMC7
      Conserved Domains (14) summary
      cd00020
      Location:662782
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam05923
      Location:16941718
      APC_crr; APC cysteine-rich region
      pfam05924
      Location:20922111
      SAMP; SAMP Motif
      pfam05937
      Location:27282902
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:22812626
      APC_basic; APC basic domain
      pfam11414
      Location:127207
      Suppressor_APC; Adenomatous polyposis coli tumour suppressor protein
      pfam16629
      Location:7831070
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:10871186
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:13361421
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:17191775
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:17961896
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:19332004
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      pfam16689
      Location:455
      APC_N_CC; Coiled-coil N-terminus of APC, dimerization domain
      sd00043
      Location:614646
      ARM; armadillo repeat [structural motif]
    14. XM_059890491.1XP_059746474.1  adenomatous polyposis coli protein isoform X8

      UniProtKB/TrEMBL
      A0A3Q1LMC7
      Related
      ENSBTAP00000056724.2, ENSBTAT00000075487.2
    15. XM_015472988.3XP_015328474.1  adenomatous polyposis coli protein isoform X14

      UniProtKB/TrEMBL
      A0A3Q1N9U7
      Related
      ENSBTAP00000067952.2, ENSBTAT00000067496.2
      Conserved Domains (12) summary
      cd00020
      Location:479599
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam05923
      Location:15111535
      APC_crr; APC cysteine-rich region
      pfam05924
      Location:19091928
      SAMP; SAMP Motif
      pfam05937
      Location:25452719
      EB1_binding; EB-1 Binding Domain
      pfam05956
      Location:20982443
      APC_basic; APC basic domain
      pfam16629
      Location:600887
      Arm_APC_u3; Armadillo-associated region on APC
      pfam16630
      Location:9041003
      APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
      pfam16633
      Location:11531238
      APC_u9; Unstructured region on APC between 1st two creatine-rich regions
      pfam16634
      Location:15361592
      APC_u13; Unstructured region on APC between APC_crr and SAMP
      pfam16635
      Location:16131713
      APC_u14; Unstructured region on APC between SAMP and APC_crr
      pfam16636
      Location:17501821
      APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
      sd00043
      Location:431463
      ARM; armadillo repeat [structural motif]