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    LHFPL6 LHFPL tetraspan subfamily member 6 [ Bos taurus (domestic cattle) ]

    Gene ID: 532944, updated on 27-Dec-2024

    Summary

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    Official Symbol
    LHFPL6provided by VGNC
    Official Full Name
    LHFPL tetraspan subfamily member 6provided by VGNC
    Primary source
    VGNC:VGNC:30869
    See related
    BGD:BT16270; Ensembl:ENSBTAG00000034033
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    LHFP
    Orthologs
    human mouse all
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    Genomic context

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    See LHFPL6 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (22796973..23031263)

    Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112449126 Neighboring gene component of oligomeric golgi complex 6 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene uncharacterized LOC132346747 Neighboring gene NHL repeat containing 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LHFPL tetraspan subfamily member 6 protein
    Names
    lipoma HMGIC fusion partner
    NP_001071458.1
    XP_005213696.1
    XP_005213697.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077990.1 → NP_001071458.1  LHFPL tetraspan subfamily member 6 protein precursor

      See identical proteins and their annotated locations for NP_001071458.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120189
      UniProtKB/TrEMBL
      Q0P5D5
      Conserved Domains (1) summary
      cl21598
      Location:8 → 163
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22796973..23031263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005213639.4 → XP_005213696.1  LHFPL tetraspan subfamily member 6 protein isoform X1

      See identical proteins and their annotated locations for XP_005213696.1

      UniProtKB/TrEMBL
      F6QM05
      Conserved Domains (1) summary
      pfam10242
      Location:8 → 193
      L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein

    2. XM_005213640.5 → XP_005213697.1  LHFPL tetraspan subfamily member 6 protein isoform X1

      See identical proteins and their annotated locations for XP_005213697.1

      UniProtKB/TrEMBL
      F6QM05
      Related
      ENSBTAP00000045345.3, ENSBTAT00000048277.4
      Conserved Domains (1) summary
      pfam10242
      Location:8 → 193
      L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
    Nucleotide Protein Strain
    Heading Accession and Version

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