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    PAXIP1 PAX interacting protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 513213, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PAXIP1provided by VGNC
    Official Full Name
    PAX interacting protein 1provided by VGNC
    Primary source
    VGNC:VGNC:32602
    See related
    BGD:BT14015; Ensembl:ENSBTAG00000017505
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PAXIP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (116913456..116954994, complement)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene dipeptidyl peptidase like 6 Neighboring gene uncharacterized LOC132345158 Neighboring gene uncharacterized LOC132345159 Neighboring gene uncharacterized LOC112446459 Neighboring gene 5-hydroxytryptamine receptor 5A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of transcription initiation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PAX-interacting protein 1
    Names
    PAX interacting (with transcription-activation domain) protein 1
    PAX transactivation activation domain-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077917.1 → NP_001071385.1  PAX-interacting protein 1

      See identical proteins and their annotated locations for NP_001071385.1

      Status: PROVISIONAL

      Source sequence(s)
      BC126589
      UniProtKB/Swiss-Prot
      A0JNA8
      UniProtKB/TrEMBL
      G3MZP9
      Related
      ENSBTAP00000055051.3, ENSBTAT00000064484.3
      Conserved Domains (3) summary
      smart00292
      Location:885 → 968
      BRCT; breast cancer carboxy-terminal domain
      cd00027
      Location:784 → 850
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
      pfam12738
      Location:625 → 686
      PTCB-BRCT; twin BRCT domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      116913456..116954994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059885539.1 → XP_059741522.1  PAX-interacting protein 1 isoform X2

      UniProtKB/Swiss-Prot
      A0JNA8
      UniProtKB/TrEMBL
      G3MZP9

    2. XM_059885538.1 → XP_059741521.1  PAX-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0AAF6Z3W7
      Related
      ENSBTAP00000023287.7, ENSBTAT00000023287.7

    3. XM_059885540.1 → XP_059741523.1  PAX-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      G3MZP9
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0JNA8.1 GenPept UniProtKB/Swiss-Prot:A0JNA8

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