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    GAPVD1 GTPase activating protein and VPS9 domains 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 539646, updated on 27-Dec-2024

    Summary

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    Official Symbol
    GAPVD1provided by VGNC
    Official Full Name
    GTPase activating protein and VPS9 domains 1provided by VGNC
    Primary source
    VGNC:VGNC:29250
    See related
    BGD:BT24566; Ensembl:ENSBTAG00000011544
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GAPVD1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (96142919..96219061)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene Rab9 effector protein with kelch motifs Neighboring gene heat shock protein family A (Hsp70) member 5 Neighboring gene U6 spliceosomal RNA Neighboring gene U5 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139096

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GTPase-activating protein and VPS9 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102520.1 → NP_001095990.1  GTPase-activating protein and VPS9 domain-containing protein 1

      See identical proteins and their annotated locations for NP_001095990.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140474
      UniProtKB/Swiss-Prot
      A5D794
      Conserved Domains (2) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1309 → 1410
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      96142919..96219061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010810351.4 → XP_010808653.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      smart00323
      Location:89 → 446
      RasGAP; GTPase-activator protein for Ras-like GTPases
      pfam02204
      Location:1362 → 1463
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    2. XM_010810352.4 → XP_010808654.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X2

      See identical proteins and their annotated locations for XP_010808654.1

      UniProtKB/TrEMBL
      A0A3Q1MH83
      Related
      ENSBTAP00000068422.1, ENSBTAT00000084395.2
      Conserved Domains (2) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1357 → 1458
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    3. XM_010810355.4 → XP_010808657.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X5

      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      smart00323
      Location:89 → 446
      RasGAP; GTPase-activator protein for Ras-like GTPases
      pfam02204
      Location:1335 → 1436
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    4. XM_024999024.2 → XP_024854792.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0AAF6YWB1
      Related
      ENSBTAP00000015341.5, ENSBTAT00000015341.6
      Conserved Domains (2) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1330 → 1431
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    5. XM_010810353.4 → XP_010808655.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X3

      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      smart00323
      Location:89 → 446
      RasGAP; GTPase-activator protein for Ras-like GTPases
      pfam02204
      Location:1341 → 1442
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    6. XM_024999023.2 → XP_024854791.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

      Conserved Domains (2) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1336 → 1437
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5D794.1 GenPept UniProtKB/Swiss-Prot:A5D794

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