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    ODR4 odr-4 GPCR localization factor homolog [ Bos taurus (domestic cattle) ]

    Gene ID: 507724, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ODR4provided by VGNC
    Official Full Name
    odr-4 GPCR localization factor homologprovided by VGNC
    Primary source
    VGNC:VGNC:49540
    See related
    Ensembl:ENSBTAG00000011946
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C16H1orf27
    Orthologs
    human mouse all
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    Genomic context

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    See ODR4 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (67461860..67498406)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene proteoglycan 4 Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene histone H2B type 1-L-like Neighboring gene phosducin Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein odr-4 homolog
    Names
    odorant response abnormal 4
    NP_001074371.2
    XP_059731296.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080902.2 → NP_001074371.2  protein odr-4 homolog

      See identical proteins and their annotated locations for NP_001074371.2

      Status: VALIDATED

      Source sequence(s)
      BC148916, EH146650, EH182352
      UniProtKB/TrEMBL
      F1N582
      Related
      ENSBTAP00000015853.6, ENSBTAT00000015853.7
      Conserved Domains (1) summary
      pfam14778
      Location:28 → 385
      ODR4-like; Olfactory receptor 4-like

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      67461860..67498406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059875313.1 → XP_059731296.1  protein odr-4 homolog isoform X1

      UniProtKB/TrEMBL
      F1N582
    Nucleotide Protein Strain
    Heading Accession and Version

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