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    RIOX2 ribosomal oxygenase 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 540466, updated on 27-Dec-2024

    Summary

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    Official Symbol
    RIOX2provided by VGNC
    Official Full Name
    ribosomal oxygenase 2provided by VGNC
    Primary source
    VGNC:VGNC:33980
    See related
    BGD:BT12338; Ensembl:ENSBTAG00000015546
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RIOX2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (42193300..42230791, complement)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene anaphase-promoting complex subunit 15 Neighboring gene protein CDV3 homolog Neighboring gene ADP ribosylation factor like GTPase 6 Neighboring gene crystallin beta-gamma domain containing 3 Neighboring gene uncharacterized LOC132345493 Neighboring gene gamma-aminobutyric acid type A receptor rho3 subunit Neighboring gene olfactory receptor family 5 subfamily AC member 27, pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC134198

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal oxygenase 2
    Names
    MINA
    MYC induced nuclear antigen
    bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA
    histone lysine demethylase MINA
    NP_001015675.1
    XP_024847079.2
    XP_024847081.1
    XP_024847083.1
    XP_024847085.1
    XP_059742019.1
    XP_059742037.1
    XP_059742041.1
    XP_059742043.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015675.1 → NP_001015675.1  ribosomal oxygenase 2

      See identical proteins and their annotated locations for NP_001015675.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020745
      UniProtKB/Swiss-Prot
      Q32KR4, Q5EA24
      UniProtKB/TrEMBL
      A0AAA9TXP8
      Related
      ENSBTAP00000075737.1, ENSBTAT00000113470.1
      Conserved Domains (1) summary
      pfam08007
      Location:52 → 363
      Cupin_4; Cupin superfamily protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      42193300..42230791 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886036.1 → XP_059742019.1  ribosomal oxygenase 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TXP8

    2. XM_024991313.2 → XP_024847081.1  ribosomal oxygenase 2 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MI23, A0AAA9TXP8
      Conserved Domains (1) summary
      pfam08007
      Location:52 → 363
      Cupin_4; Cupin superfamily protein

    3. XM_024991317.2 → XP_024847085.1  ribosomal oxygenase 2 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MI23, A0AAA9TXP8
      Conserved Domains (1) summary
      pfam08007
      Location:52 → 363
      Cupin_4; Cupin superfamily protein

    4. XM_024991315.2 → XP_024847083.1  ribosomal oxygenase 2 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MI23, A0AAA9TXP8
      Related
      ENSBTAP00000070898.1, ENSBTAT00000070121.2
      Conserved Domains (1) summary
      pfam08007
      Location:52 → 363
      Cupin_4; Cupin superfamily protein

    5. XM_059886060.1 → XP_059742043.1  ribosomal oxygenase 2 isoform X6

    6. XM_024991311.2 → XP_024847079.2  ribosomal oxygenase 2 isoform X2

      UniProtKB/TrEMBL
      A0AAA9TXP8

    7. XM_059886058.1 → XP_059742041.1  ribosomal oxygenase 2 isoform X5

      UniProtKB/TrEMBL
      A0AAA9TXP8

    8. XM_059886054.1 → XP_059742037.1  ribosomal oxygenase 2 isoform X4

      UniProtKB/TrEMBL
      A0AAA9TXP8

    RNA

    1. XR_009494333.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EA24.1 GenPept UniProtKB/Swiss-Prot:Q5EA24

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials