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    SLC35A5 solute carrier family 35 member A5 [ Bos taurus (domestic cattle) ]

    Gene ID: 534488, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SLC35A5provided by VGNC
    Official Full Name
    solute carrier family 35 member A5provided by VGNC
    Primary source
    VGNC:VGNC:34822
    See related
    BGD:BT23131; Ensembl:ENSBTAG00000009085
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SLC35A5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (57343877..57364456)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene B and T lymphocyte associated Neighboring gene autophagy related 3 Neighboring gene coiled-coil domain containing 80 Neighboring gene uncharacterized LOC132345593

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyrimidine nucleotide-sugar transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pyrimidine nucleotide-sugar transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-sugar transporter protein SLC35A5
    Names
    probable UDP-sugar transporter protein SLC35A5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076025.2 → NP_001069493.2  UDP-sugar transporter protein SLC35A5

      See identical proteins and their annotated locations for NP_001069493.2

      Status: VALIDATED

      Source sequence(s)
      DT811793, DV875983, DV887318, DV892489
      UniProtKB/Swiss-Prot
      A6QPI1, Q0V8M4
      UniProtKB/TrEMBL
      A0AAF6YT79
      Conserved Domains (1) summary
      pfam04142
      Location:23 → 374
      Nuc_sug_transp; Nucleotide-sugar transporter

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      57343877..57364456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005201331.5 → XP_005201388.2  UDP-sugar transporter protein SLC35A5 isoform X1

      See identical proteins and their annotated locations for XP_005201388.2

      UniProtKB/Swiss-Prot
      A6QPI1, Q0V8M4
      UniProtKB/TrEMBL
      A0AAF6YT79
      Related
      ENSBTAP00000011977.5, ENSBTAT00000011977.6
      Conserved Domains (1) summary
      pfam04142
      Location:23 → 374
      Nuc_sug_transp; Nucleotide-sugar transporter

    2. XM_005201332.5 → XP_005201389.4  UDP-sugar transporter protein SLC35A5 isoform X2

      UniProtKB/TrEMBL
      A0AAF6YT79

    3. XM_059885345.1 → XP_059741328.1  UDP-sugar transporter protein SLC35A5 isoform X5

    4. XM_059885343.1 → XP_059741326.1  UDP-sugar transporter protein SLC35A5 isoform X3

    5. XM_059885344.1 → XP_059741327.1  UDP-sugar transporter protein SLC35A5 isoform X4

    6. XM_024990368.2 → XP_024846136.1  UDP-sugar transporter protein SLC35A5 isoform X4

      Conserved Domains (1) summary
      pfam04142
      Location:12 → 255
      Nuc_sug_transp; Nucleotide-sugar transporter
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QPI1.1 GenPept UniProtKB/Swiss-Prot:A6QPI1

    Gene LinkOut

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