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    TRUB2 TruB pseudouridine synthase family member 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 511988, updated on 30-Jan-2025

    Summary

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    Official Symbol
    TRUB2provided by VGNC
    Official Full Name
    TruB pseudouridine synthase family member 2provided by VGNC
    Primary source
    VGNC:VGNC:36405
    See related
    BGD:BT16054; EnsemblRapid:ENSBTAG00070019021
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TRUB2 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (98897030..98918705, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132346638 Neighboring gene golgin A2 Neighboring gene SWI5 homologous recombination repair protein Neighboring gene coenzyme Q4 Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC140821

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pseudouridylate synthase TRUB2, mitochondrial
    Names
    TruB pseudouridine (psi) synthase homolog 2
    NP_001421677.1
    NP_001421680.1
    XP_059747155.1
    XP_059747156.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001434748.1 → NP_001421677.1  pseudouridylate synthase TRUB2, mitochondrial isoform 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000011
      Related
      ENSBTAP00070025687.1, ENSBTAT00070042934.1

    2. NM_001434751.1 → NP_001421680.1  pseudouridylate synthase TRUB2, mitochondrial isoform 2

      Status: VALIDATED

      Source sequence(s)
      NKLS02000011

    RNA

    1. NR_197959.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      NKLS02000011

    2. NR_197960.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      NKLS02000011

    3. NR_197961.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      NKLS02000011

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      98897030..98918705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059891172.1 → XP_059747155.1  pseudouridylate synthase TRUB2, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0AAA9U1A6
      Related
      ENSBTAP00070025690.1, ENSBTAT00070042938.1

    2. XM_059891173.1 → XP_059747156.1  pseudouridylate synthase TRUB2, mitochondrial isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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