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    ATG2A autophagy related 2A [ Bos taurus (domestic cattle) ]

    Gene ID: 529808, updated on 1-Jan-2025

    Summary

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    Official Symbol
    ATG2Aprovided by VGNC
    Official Full Name
    autophagy related 2Aprovided by VGNC
    Primary source
    VGNC:VGNC:106645
    See related
    BGD:BT27985; Ensembl:ENSBTAG00000007058
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ATG2A in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (43117321..43138368, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene EH domain containing 1 Neighboring gene microRNA mir-194b-2 Neighboring gene microRNA mir-194-2 Neighboring gene microRNA mir-192 Neighboring gene protein phosphatase 2 regulatory subunit B'beta Neighboring gene glycoprotein hormone subunit alpha 2 Neighboring gene membrane anchored junction protein Neighboring gene uncharacterized LOC132344207

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in piecemeal microautophagy of the nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reticulophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy-related protein 2 homolog A
    Names
    ATG2 autophagy related 2 homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205966.2 → NP_001192895.2  autophagy-related protein 2 homolog A

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000029
      UniProtKB/TrEMBL
      F1N0I5
      Related
      ENSBTAP00000009283.6, ENSBTAT00000009283.6
      Conserved Domains (3) summary
      pfam09333
      Location:1842 → 1932
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:14 → 109
      Chorein_N; N-terminal region of Chorein or VPS13
      cl25572
      Location:43 → 183
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      43117321..43138368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024987175.2 → XP_024842943.1  autophagy-related protein 2 homolog A isoform X2

      Conserved Domains (3) summary
      pfam09333
      Location:1832 → 1922
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:14 → 109
      Chorein_N; N-terminal region of Chorein or VPS13
      cl25572
      Location:43 → 183
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    2. XM_010821169.4 → XP_010819471.2  autophagy-related protein 2 homolog A isoform X1

      Conserved Domains (3) summary
      pfam09333
      Location:1844 → 1934
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:14 → 109
      Chorein_N; N-terminal region of Chorein or VPS13
      cl25572
      Location:43 → 183
      VPS13; Vacuolar sorting-associated protein 13, N-terminal
    Nucleotide Protein Strain
    Heading Accession and Version

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