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    CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 509328, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CSGALNACT2provided by VGNC
    Official Full Name
    chondroitin sulfate N-acetylgalactosaminyltransferase 2provided by VGNC
    Primary source
    VGNC:VGNC:27760
    See related
    BGD:BT17097; Ensembl:ENSBTAG00000005165
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CSGALNACT2 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (13524044..13585253)

    Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene protein lin-28 homolog A-like Neighboring gene ret proto-oncogene Neighboring gene RasGEF domain family member 1A Neighboring gene uncharacterized LOC132344126

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chondroitin sulfate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chondroitin sulfate N-acetylgalactosaminyltransferase 2
    NP_001192582.1
    XP_005226310.1
    XP_005226312.1
    XP_024842392.1
    XP_059738463.1
    XP_059738464.1
    XP_059738465.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205653.1 → NP_001192582.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2

      See identical proteins and their annotated locations for NP_001192582.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000028
      Related
      ENSBTAP00000059178.2, ENSBTAT00000070881.2
      Conserved Domains (1) summary
      cl11394
      Location:140 → 516
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      13524044..13585253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882481.1 → XP_059738464.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LQC5

    2. XM_059882480.1 → XP_059738463.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

      UniProtKB/TrEMBL
      E1B7B3
      Related
      ENSBTAP00000006810.6, ENSBTAT00000006810.6

    3. XM_005226253.5 → XP_005226310.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X2

      See identical proteins and their annotated locations for XP_005226310.1

      UniProtKB/TrEMBL
      A0A3Q1LQC5
      Conserved Domains (1) summary
      cl11394
      Location:173 → 549
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    4. XM_005226255.4 → XP_005226312.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M3V1
      Related
      ENSBTAP00000062887.1, ENSBTAT00000070412.2
      Conserved Domains (1) summary
      cl11394
      Location:173 → 515
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    5. XM_024986624.2 → XP_024842392.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X4

      Conserved Domains (1) summary
      cl11394
      Location:173 → 358
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    6. XM_059882482.1 → XP_059738465.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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