U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RLF RLF zinc finger [ Bos taurus (domestic cattle) ]

    Gene ID: 527058, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RLFprovided by VGNC
    Official Full Name
    RLF zinc fingerprovided by VGNC
    Primary source
    VGNC:VGNC:33990
    See related
    BGD:BT16403; Ensembl:ENSBTAG00000019695
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RLF in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (105894662..105974338, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL19-like Neighboring gene transmembrane and coiled-coil domains 2 Neighboring gene uncharacterized LOC132344934 Neighboring gene small nucleolar RNA SNORA79 Neighboring gene palmitoyl-protein thioesterase 1 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene cyclase associated actin cytoskeleton regulatory protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger protein Rlf
    Names
    rearranged L-myc fusion

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205939.2 → NP_001192868.2  zinc finger protein Rlf

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000003
      UniProtKB/TrEMBL
      E1BAS5
      Related
      ENSBTAP00000026252.5, ENSBTAT00000026252.6
      Conserved Domains (2) summary
      COG5236
      Location:646 → 822
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:716 → 736
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      105894662..105974338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884597.1 → XP_059740580.1  zinc finger protein Rlf isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M0Y2
      Related
      ENSBTAP00000063653.1, ENSBTAT00000068982.2

    2. XM_059884598.1 → XP_059740581.1  zinc finger protein Rlf isoform X2

    3. XM_059884599.1 → XP_059740582.1  zinc finger protein Rlf isoform X3

    4. XM_059884601.1 → XP_059740584.1  zinc finger protein Rlf isoform X5

    5. XM_059884600.1 → XP_059740583.1  zinc finger protein Rlf isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials