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    COPZ2 COPI coat complex subunit zeta 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 616222, updated on 27-Dec-2024

    Summary

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    Official Symbol
    COPZ2provided by VGNC
    Official Full Name
    COPI coat complex subunit zeta 2provided by VGNC
    Primary source
    VGNC:VGNC:27608
    See related
    Ensembl:ENSBTAG00000039954
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See COPZ2 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (38443698..38453502)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 11 Neighboring gene chromobox 1 Neighboring gene NFE2 like bZIP transcription factor 1 Neighboring gene microRNA mir-148c Neighboring gene microRNA mir-152 Neighboring gene CDK5 regulatory subunit associated protein 3 Neighboring gene proline rich 15 like Neighboring gene pyridoxamine 5'-phosphate oxidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. Jann OC, et al. BMC Genomics, 2006 Nov 6. PMID 17087818, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPI vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coatomer subunit zeta-2
    Names
    coatomer protein complex subunit zeta 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206921.1 → NP_001193850.1  coatomer subunit zeta-2 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      CO892434, DN533919
      UniProtKB/TrEMBL
      A0A3Q1LYE2
      Related
      ENSBTAP00000060654.2, ENSBTAT00000070792.2
      Conserved Domains (1) summary
      cd14829
      Location:47 → 178
      Zeta-COP; zeta subunit of the F-COPI complex

    2. NM_001206922.1 → NP_001193851.1  coatomer subunit zeta-2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents use of an alternate promoter, 5' UTR, and 5' coding region, compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus, compared to isoform 1.
      Source sequence(s)
      CB448079, CO892434
      UniProtKB/TrEMBL
      F1MXE6
      Related
      ENSBTAP00000051299.3, ENSBTAT00000056479.3
      Conserved Domains (1) summary
      cl02092
      Location:32 → 166
      Clat_adaptor_s; Clathrin adaptor complex small chain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      38443698..38453502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024980452.2 → XP_024836220.1  coatomer subunit zeta-2 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LRP8, A0A3Q1LYE2
      Related
      ENSBTAP00000059849.2, ENSBTAT00000072788.2
      Conserved Domains (1) summary
      cd14829
      Location:47 → 178
      Zeta-COP; zeta subunit of the F-COPI complex
    Nucleotide Protein
    Heading Accession and Version

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