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    CLP1 cleavage factor polyribonucleotide kinase subunit 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 506507, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CLP1provided by VGNC
    Official Full Name
    cleavage factor polyribonucleotide kinase subunit 1provided by VGNC
    Primary source
    VGNC:VGNC:27457
    See related
    BGD:BT23864; Ensembl:ENSBTAG00000006493
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CLP1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (80893695..80903792)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112441661 Neighboring gene microRNA mir-130a Neighboring gene yippee like 4 Neighboring gene basic proline-rich protein-like Neighboring gene zinc finger DHHC-type palmitoyltransferase 5 Neighboring gene mediator complex subunit 19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC142985

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polynucleotide 5'-hydroxyl-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyribonucleotide 5'-hydroxyl-kinase Clp1
    Names
    CLP1, cleavage and polyadenylation factor I subunit, homolog
    cleavage and polyadenylation factor I subunit 1
    polyadenylation factor Clp1
    polynucleotide kinase Clp1
    pre-mRNA cleavage complex II protein Clp1
    NP_001075182.1
    XP_005216587.1
    XP_005216588.1
    XP_005216589.1
    XP_024830855.1
    XP_059730591.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081713.1 → NP_001075182.1  polyribonucleotide 5'-hydroxyl-kinase Clp1

      See identical proteins and their annotated locations for NP_001075182.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133499
      UniProtKB/Swiss-Prot
      A2VE01
      Related
      ENSBTAP00000008507.3, ENSBTAT00000008507.4
      Conserved Domains (2) summary
      COG5623
      Location:14 → 423
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      80893695..80903792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059874608.1 → XP_059730591.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/Swiss-Prot
      A2VE01

    2. XM_024975087.2 → XP_024830855.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/Swiss-Prot
      A2VE01
      Conserved Domains (2) summary
      COG5623
      Location:14 → 423
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    3. XM_005216530.5 → XP_005216587.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      See identical proteins and their annotated locations for XP_005216587.1

      UniProtKB/Swiss-Prot
      A2VE01
      Conserved Domains (2) summary
      COG5623
      Location:14 → 423
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    4. XM_005216532.5 → XP_005216589.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      See identical proteins and their annotated locations for XP_005216589.1

      UniProtKB/Swiss-Prot
      A2VE01
      Conserved Domains (2) summary
      COG5623
      Location:14 → 423
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    5. XM_005216531.5 → XP_005216588.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      See identical proteins and their annotated locations for XP_005216588.1

      UniProtKB/Swiss-Prot
      A2VE01
      Conserved Domains (2) summary
      COG5623
      Location:14 → 423
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2VE01.1 GenPept UniProtKB/Swiss-Prot:A2VE01

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