U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    IFI30 IFI30 lysosomal thiol reductase [ Bos taurus (domestic cattle) ]

    Gene ID: 615930, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    IFI30provided by VGNC
    Official Full Name
    IFI30 lysosomal thiol reductaseprovided by VGNC
    Primary source
    VGNC:VGNC:30043
    See related
    BGD:BT30023; Ensembl:ENSBTAG00000018349
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See IFI30 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (5054904..5058251, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene RAB3A, member RAS oncogene family Neighboring gene MPV17 mitochondrial inner membrane protein like 2 Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 Neighboring gene phosphoinositide-3-kinase regulatory subunit 2 Neighboring gene microtubule associated serine/threonine kinase 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and physical mapping of genes expressed in the corpus luteum in cattle. Bønsdorff T, et al. Anim Genet, 2003 Oct. PMID 14510667
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    gamma-interferon-inducible lysosomal thiol reductase
    Names
    gamma-inducible protein 30
    interferon, gamma-inducible protein 30

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101251.2 → NP_001094721.1  gamma-interferon-inducible lysosomal thiol reductase precursor

      See identical proteins and their annotated locations for NP_001094721.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149406
      UniProtKB/Swiss-Prot
      A6QPN6
      UniProtKB/TrEMBL
      A0AAF6ZGY2
      Related
      ENSBTAP00000045061.5, ENSBTAT00000047907.5
      Conserved Domains (1) summary
      pfam03227
      Location:57 → 160
      GILT; Gamma interferon inducible lysosomal thiol reductase (GILT)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      5054904..5058251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QPN6.1 GenPept UniProtKB/Swiss-Prot:A6QPN6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.