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    PEBP4 phosphatidylethanolamine binding protein 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 513254, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PEBP4provided by VGNC
    Official Full Name
    phosphatidylethanolamine binding protein 4provided by VGNC
    Primary source
    VGNC:VGNC:32736
    See related
    BGD:BT16530; Ensembl:ENSBTAG00000015416
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PEBP4 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (70019047..70244688, complement)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene bridging integrator 3 Neighboring gene early growth response 3 Neighboring gene rho-related BTB domain-containing protein 2 Neighboring gene Rho-related BTB domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Comparative sperm protein profiling in bulls differing in fertility and identification of phosphatidylethanolamine-binding protein 4, a potential fertility marker. Somashekar L, et al. Andrology, 2017 Sep. PMID 28859251
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the possible role of PEBP4 in determining spermatozoa function and fertility
      Title: Comparative sperm protein profiling in bulls differing in fertility and identification of phosphatidylethanolamine-binding protein 4, a potential fertility marker.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC127772

    General protein information

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    Preferred Names
    phosphatidylethanolamine-binding protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034440.1 → NP_001029612.1  phosphatidylethanolamine-binding protein 4 precursor

      See identical proteins and their annotated locations for NP_001029612.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102615
      UniProtKB/TrEMBL
      A0A3Q1LH52, Q3T010
      Related
      ENSBTAP00000050912.2, ENSBTAT00000055568.4
      Conserved Domains (1) summary
      cd00866
      Location:46 → 197
      PEBP_euk; PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      70019047..70244688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005210248.4 → XP_005210305.1  phosphatidylethanolamine-binding protein 4 isoform X3

      See identical proteins and their annotated locations for XP_005210305.1

      UniProtKB/TrEMBL
      A0A3Q1LH52
      Conserved Domains (1) summary
      cl00227
      Location:87 → 164
      PEBP; PhosphatidylEthanolamine-Binding Protein (PEBP) domain

    2. XM_024995672.2 → XP_024851440.1  phosphatidylethanolamine-binding protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LH52
      Conserved Domains (1) summary
      cl00227
      Location:87 → 164
      PEBP; PhosphatidylEthanolamine-Binding Protein (PEBP) domain

    3. XM_059889051.1 → XP_059745034.1  phosphatidylethanolamine-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LH52, Q3T010

    4. XM_059889053.1 → XP_059745036.1  phosphatidylethanolamine-binding protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LH52

    5. XM_005210245.5 → XP_005210302.1  phosphatidylethanolamine-binding protein 4 isoform X1

      See identical proteins and their annotated locations for XP_005210302.1

      UniProtKB/TrEMBL
      A0A3Q1LH52, Q3T010
      Related
      ENSBTAP00000057985.2, ENSBTAT00000068060.2
      Conserved Domains (1) summary
      cd00866
      Location:46 → 197
      PEBP_euk; PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes

    6. XM_059889052.1 → XP_059745035.1  phosphatidylethanolamine-binding protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LUP0
    Nucleotide Protein Strain
    Heading Accession and Version

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