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    CD99 CD99 molecule [ Bos taurus (domestic cattle) ]

    Gene ID: 509230, updated on 1-Jan-2025

    Summary

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    Official Symbol
    CD99provided by VGNC
    Official Full Name
    CD99 moleculeprovided by VGNC
    Primary source
    VGNC:VGNC:50554
    See related
    BGD:BT26573; Ensembl:ENSBTAG00000008114
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CD99 in Genome Data Viewer
    Location:
    chromosome: X, chromosome: Y
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (138754708..138784885, complement)
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) Y NC_082638.1 (1319379..1349633)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene glycogenin 2 Neighboring gene Xg glycoprotein Neighboring gene uncharacterized LOC104970645 Neighboring gene uncharacterized LOC132344373 Neighboring gene small nucleolar RNA U109 Neighboring gene zinc finger BED-type containing 1 Neighboring gene dehydrogenase/reductase X-linked

    Chromosome Y - NC_082638.1Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase X-linked Neighboring gene small nucleolar RNA U109 Neighboring gene zinc finger BED-type containing 1 Neighboring gene uncharacterized LOC132344373 Neighboring gene uncharacterized LOC104970645 Neighboring gene Xg glycoprotein Neighboring gene glycogenin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in T cell extravasation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homotypic cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of neutrophil extravasation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CD99 antigen
    Names
    CD99 molecule (Xg blood group)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001244214.1 → NP_001231143.1  CD99 antigen precursor

      Status: PROVISIONAL

      Source sequence(s)
      BC114780, DV778506, DV888805, DV926974, DY457628, EE376609, EW682951
      UniProtKB/TrEMBL
      A0A3Q1NN33, A0AAA9S2J6
      Related
      ENSBTAP00000074094.1, ENSBTAT00000087222.1
      Conserved Domains (1) summary
      pfam12301
      Location:25 → 181
      CD99L2; CD99 antigen like protein 2

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      138754708..138784885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024987849.2 → XP_024843617.1  CD99 antigen isoform X1

      UniProtKB/TrEMBL
      A0AAA9S2J6
      Conserved Domains (1) summary
      pfam12301
      Location:25 → 159
      CD99L2; CD99 antigen like protein 2

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_082638.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      1319379..1349633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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