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    SSR2 signal sequence receptor subunit 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 506530, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SSR2provided by VGNC
    Official Full Name
    signal sequence receptor subunit 2provided by VGNC
    Primary source
    VGNC:VGNC:35320
    See related
    Ensembl:ENSBTAG00000001212
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SSR2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (14754153..14760784)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene protein lin-28 homolog A-like Neighboring gene uncharacterized LOC112445859 Neighboring gene Rho/Rac guanine nucleotide exchange factor 2 Neighboring gene relaxin family peptide/INSL5 receptor 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translocon-associated protein subunit beta
    Names
    SSR-beta
    TRAP-beta
    signal sequence receptor subunit beta
    signal sequence receptor, beta (translocon-associated protein beta)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015533.1 → NP_001015533.1  translocon-associated protein subunit beta precursor

      See identical proteins and their annotated locations for NP_001015533.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020976
      UniProtKB/Swiss-Prot
      Q3T162, Q5E9E4
      UniProtKB/TrEMBL
      B0JYM9
      Conserved Domains (1) summary
      pfam05753
      Location:4 → 179
      TRAP_beta; Translocon-associated protein beta (TRAPB)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      14754153..14760784
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005203668.5 → XP_005203725.2  translocon-associated protein subunit beta isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MDG8, B0JYM9
      Related
      ENSBTAP00000066874.1, ENSBTAT00000073018.2
      Conserved Domains (1) summary
      pfam05753
      Location:7 → 182
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5E9E4.1 GenPept UniProtKB/Swiss-Prot:Q5E9E4

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