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    CHTOP chromatin target of PRMT1 [ Bos taurus (domestic cattle) ]

    Gene ID: 616638, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CHTOPprovided by VGNC
    Official Full Name
    chromatin target of PRMT1provided by VGNC
    Primary source
    VGNC:VGNC:27353
    See related
    Ensembl:ENSBTAG00000005166
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    FOP; SRAG; C1orf77; C3H1orf77
    Orthologs
    human mouse all
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    Genomic context

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    See CHTOP in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (16741096..16750565, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132344835 Neighboring gene SNAP associated protein Neighboring gene S100 calcium binding protein A1 Neighboring gene S100 calcium binding protein A13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC127628

    General protein information

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    Preferred Names
    chromatin target of PRMT1 protein
    Names
    Friend of PRMT1 protein
    small arginine- and glycine-rich protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035481.2 → NP_001030558.1  chromatin target of PRMT1 protein

      See identical proteins and their annotated locations for NP_001030558.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103347
      UniProtKB/Swiss-Prot
      Q3SYW9
      Conserved Domains (1) summary
      pfam13865
      Location:209 → 243
      FoP_duplication; C-terminal duplication domain of Friend of PRMT1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      16741096..16750565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884877.1 → XP_059740860.1  chromatin target of PRMT1 protein isoform X5

      Related
      ENSBTAP00000084009.1, ENSBTAT00000126181.1

    2. XM_005203758.5 → XP_005203815.1  chromatin target of PRMT1 protein isoform X3

      See identical proteins and their annotated locations for XP_005203815.1

      UniProtKB/TrEMBL
      A0A452DJ60
      Related
      ENSBTAP00000033800.4, ENSBTAT00000033894.5
      Conserved Domains (1) summary
      pfam13865
      Location:210 → 244
      FoP_duplication; C-terminal duplication domain of Friend of PRMT1

    3. XM_059884875.1 → XP_059740858.1  chromatin target of PRMT1 protein isoform X2

    4. XM_059884876.1 → XP_059740859.1  chromatin target of PRMT1 protein isoform X4

    5. XM_059884873.1 → XP_059740856.1  chromatin target of PRMT1 protein isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MEN6
      Related
      ENSBTAP00000069496.2, ENSBTAT00000085848.2

    6. XM_059884874.1 → XP_059740857.1  chromatin target of PRMT1 protein isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MEN6

    7. XM_059884879.1 → XP_059740862.1  chromatin target of PRMT1 protein isoform X7

    8. XM_059884878.1 → XP_059740861.1  chromatin target of PRMT1 protein isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3SYW9.1 GenPept UniProtKB/Swiss-Prot:Q3SYW9

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