U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Bos taurus (domestic cattle) ]

    Gene ID: 506551, updated on 30-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    POMGNT1provided by VGNC
    Official Full Name
    protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)provided by VGNC
    Primary source
    VGNC:VGNC:55660
    See related
    BGD:BT20006; EnsemblRapid:ENSBTAG00070004432
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See POMGNT1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (99869871..99893602)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104971814 Neighboring gene leucine rich repeat containing 41 Neighboring gene RAD54 like Neighboring gene leucine rich adaptor protein 1 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene tetraspanin 1 Neighboring gene PIK3R3 upstream open reading frame

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • FLJ20277

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in O-glycan processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
    Names
    O-linked mannose beta1,2-N-acetylglucosaminyltransferase
    protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase
    NP_001019656.2
    XP_005204733.1
    XP_015321482.1
    XP_059738732.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024485.2 → NP_001019656.2  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

      See identical proteins and their annotated locations for NP_001019656.2

      Status: PROVISIONAL

      Source sequence(s)
      BC102610
      UniProtKB/Swiss-Prot
      Q5EAB6
      UniProtKB/TrEMBL
      Q3T015
      Related
      ENSBTAP00070005818.1, ENSBTAT00070010119.1
      Conserved Domains (2) summary
      cd02514
      Location:301 → 628
      GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
      cd13937
      Location:99 → 246
      PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      99869871..99893602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882749.1 → XP_059738732.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5EAB6
      UniProtKB/TrEMBL
      Q3T015
      Related
      ENSBTAP00070005808.1, ENSBTAT00070010104.1

    2. XM_015465996.3 → XP_015321482.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5EAB6
      UniProtKB/TrEMBL
      Q3T015
      Conserved Domains (2) summary
      cd02514
      Location:301 → 628
      GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
      cd13937
      Location:99 → 246
      PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

    3. XM_005204676.5 → XP_005204733.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_005204733.1

      UniProtKB/Swiss-Prot
      Q5EAB6
      UniProtKB/TrEMBL
      Q3T015
      Related
      ENSBTAP00070005804.1, ENSBTAT00070010098.1
      Conserved Domains (2) summary
      cd02514
      Location:301 → 628
      GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
      cd13937
      Location:99 → 246
      PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EAB6.1 GenPept UniProtKB/Swiss-Prot:Q5EAB6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.