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    LYAR Ly1 antibody reactive [ Bos taurus (domestic cattle) ]

    Gene ID: 537667, updated on 27-Dec-2024

    Summary

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    Official Symbol
    LYARprovided by VGNC
    Official Full Name
    Ly1 antibody reactiveprovided by VGNC
    Primary source
    VGNC:VGNC:31095
    See related
    BGD:BT22999; Ensembl:ENSBTAG00000003653
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See LYAR in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (104819028..104839737)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene syntaxin 18 Neighboring gene neuronal vesicle trafficking associated 1 Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene transmembrane protein 128 Neighboring gene otopetrin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ20425, MGC133510

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cell growth-regulating nucleolar protein
    Names
    Ly1 antibody reactive homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031769.1 → NP_001026939.1  cell growth-regulating nucleolar protein

      Status: PROVISIONAL

      Source sequence(s)
      BT021688
      UniProtKB/TrEMBL
      A0AAA9RX06, Q58DA3
      Related
      ENSBTAP00000078013.1, ENSBTAT00000118241.1
      Conserved Domains (2) summary
      pfam08790
      Location:31 → 58
      zf-LYAR; LYAR-type C2HC zinc finger
      cl26407
      Location:171 → 338
      IF-2; Translation-initiation factor 2

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      104819028..104839737
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024993353.2 → XP_024849121.1  cell growth-regulating nucleolar protein isoform X1

      UniProtKB/TrEMBL
      A0AAA9RX06, Q58DA3
      Conserved Domains (2) summary
      pfam08790
      Location:31 → 58
      zf-LYAR; LYAR-type C2HC zinc finger
      cl26407
      Location:171 → 338
      IF-2; Translation-initiation factor 2

    2. XM_059887591.1 → XP_059743574.1  cell growth-regulating nucleolar protein isoform X1

      UniProtKB/TrEMBL
      A0AAA9RX06, Q58DA3

    3. XM_059887590.1 → XP_059743573.1  cell growth-regulating nucleolar protein isoform X1

      UniProtKB/TrEMBL
      A0AAA9RX06, Q58DA3
    Nucleotide Protein Strain
    Heading Accession and Version

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