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    GDAP1 ganglioside induced differentiation associated protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 613472, updated on 27-Dec-2024

    Summary

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    Official Symbol
    GDAP1provided by VGNC
    Official Full Name
    ganglioside induced differentiation associated protein 1provided by VGNC
    Primary source
    VGNC:VGNC:29295
    See related
    BGD:BT23371; Ensembl:ENSBTAG00000012608
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GDAP1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 14 NC_037341.1 (37595627..37645629)

    Chromosome 14 - NC_037341.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112449517 Neighboring gene chromobox protein homolog 1-like Neighboring gene junctophilin 1 Neighboring gene peptidase inhibitor 15 Neighboring gene cysteine rich secretory protein LCCL domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037341.1 Chromosome 14 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrial fission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ganglioside-induced differentiation-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101222.2 → NP_001094692.1  ganglioside-induced differentiation-associated protein 1

      Status: VALIDATED

      Source sequence(s)
      BC150048, NKLS02000014
      UniProtKB/Swiss-Prot
      A6QQZ0
      UniProtKB/TrEMBL
      A0AAA9SMP5
      Related
      ENSBTAP00000016739.5, ENSBTAT00000016739.6
      Conserved Domains (3) summary
      cd10303
      Location:179 → 289
      GST_C_GDAP1; C-terminal, alpha helical domain of Ganglioside-induced differentiation-associated protein 1
      COG0625
      Location:26 → 292
      GstA; Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
      cd03052
      Location:26 → 98
      GST_N_GDAP1; GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037341.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      37595627..37645629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059893340.1 → XP_059749323.1  ganglioside-induced differentiation-associated protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A6QQZ0
      UniProtKB/TrEMBL
      A0AAA9SMP5

    2. XM_025001727.2 → XP_024857495.1  ganglioside-induced differentiation-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SMP5
      Conserved Domains (2) summary
      cd03052
      Location:26 → 98
      GST_N_GDAP1; GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have ...
      cl02776
      Location:179 → 288
      GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family

    3. XM_059893343.1 → XP_059749326.1  ganglioside-induced differentiation-associated protein 1 isoform X3

    4. XM_059893341.1 → XP_059749324.1  ganglioside-induced differentiation-associated protein 1 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QQZ0.1 GenPept UniProtKB/Swiss-Prot:A6QQZ0

    Gene LinkOut

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