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    NUP85 nucleoporin 85 [ Bos taurus (domestic cattle) ]

    Gene ID: 510540, updated on 27-Dec-2024

    Summary

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    Official Symbol
    NUP85provided by VGNC
    Official Full Name
    nucleoporin 85provided by VGNC
    Primary source
    VGNC:VGNC:32364
    See related
    BGD:BT14164; Ensembl:ENSBTAG00000016126
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NUP85 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (56241099..56269033, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene MIF4G domain containing Neighboring gene mitochondrial ribosomal protein S7 Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 3 Neighboring gene small ubiquitin like modifier 2 Neighboring gene Jupiter microtubule associated homolog 1 Neighboring gene 5', 3'-nucleotidase, cytosolic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC127809

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore outer ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein Nup85
    Names
    85 kDa nucleoporin
    nucleoporin NUP85

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034387.1 → NP_001029559.1  nuclear pore complex protein Nup85

      See identical proteins and their annotated locations for NP_001029559.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102703
      UniProtKB/Swiss-Prot
      A7E3X3, Q3ZC98
      UniProtKB/TrEMBL
      A0A3Q1MJA8
      Related
      ENSBTAP00000034574.4, ENSBTAT00000034688.6
      Conserved Domains (1) summary
      pfam07575
      Location:53 → 606
      Nucleopor_Nup85; Nup85 Nucleoporin

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      56241099..56269033 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010816523.4 → XP_010814825.1  nuclear pore complex protein Nup85 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MJA8
      Conserved Domains (1) summary
      pfam07575
      Location:59 → 612
      Nucleopor_Nup85; Nup85 Nucleoporin

    2. XM_059877898.1 → XP_059733881.1  nuclear pore complex protein Nup85 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MJA8
      Related
      ENSBTAP00000071419.2, ENSBTAT00000083920.2
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZC98.1 GenPept UniProtKB/Swiss-Prot:Q3ZC98

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.