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    DDHD2 DDHD domain containing 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 513116, updated on 30-Jan-2025

    Summary

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    Official Symbol
    DDHD2provided by VGNC
    Official Full Name
    DDHD domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:27944
    See related
    BGD:BT25917; EnsemblRapid:ENSBTAG00070020503
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See DDHD2 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 27 NC_037354.1 (33387283..33416173)

    Chromosome 27 - NC_037354.1Genomic Context describing neighboring genes Neighboring gene LSM1 homolog, mRNA degradation associated Neighboring gene uncharacterized LOC104976116 Neighboring gene U6 spliceosomal RNA Neighboring gene BAG cochaperone 4 Neighboring gene phospholipid phosphatase 5 Neighboring gene nuclear receptor binding SET domain protein 3 Neighboring gene microRNA mir-2400

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037354.1 Chromosome 27 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139315

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triacylglycerol lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    triacylglycerol hydrolase DDHD2
    NP_001069066.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075598.2 → NP_001069066.2  triacylglycerol hydrolase DDHD2

      See identical proteins and their annotated locations for NP_001069066.2

      Status: VALIDATED

      Source sequence(s)
      AM006563, BC118200, CK847867, DN289118, DT812809, DV814732, EE342213, EE343860
      UniProtKB/TrEMBL
      A0AAA9TX51, F1MSS2
      Related
      ENSBTAP00070027778.1, ENSBTAT00070046310.1
      Conserved Domains (3) summary
      cd09516
      Location:378 → 446
      SAM_sec23ip-like; SAM domain of sec23ip-like subfamily
      pfam02825
      Location:42 → 111
      WWE; WWE domain
      pfam02862
      Location:495 → 696
      DDHD; DDHD domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037354.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      33387283..33416173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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