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    PHF10 PHD finger protein 10 [ Bos taurus (domestic cattle) ]

    Gene ID: 507648, updated on 30-Jan-2025

    Summary

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    Official Symbol
    PHF10provided by VGNC
    Official Full Name
    PHD finger protein 10provided by VGNC
    Primary source
    VGNC:VGNC:32813
    See related
    BGD:BT20156; EnsemblRapid:ENSBTAG00070016451
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PHF10 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (103494503..103515042, complement)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene thrombospondin 2 Neighboring gene WD repeat domain 27 Neighboring gene chromosome 9 C6orf120 homolog Neighboring gene dynein light chain Tctex-type 2 Neighboring gene ER membrane associated RNA degradation Neighboring gene uncharacterized LOC132346156

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC134457

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of npBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 10
    Names
    BAF45a
    BRG1-associated factor 45a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038052.1 → NP_001033141.1  PHD finger protein 10

      See identical proteins and their annotated locations for NP_001033141.1

      Status: PROVISIONAL

      Source sequence(s)
      BC111243
      UniProtKB/Swiss-Prot
      Q2T9V9
      Conserved Domains (2) summary
      cd15528
      Location:292 → 345
      PHD1_PHF10; PHD finger 1 found in PHD finger protein 10 (PHF10) and similar proteins
      cd15529
      Location:347 → 390
      PHD2_PHF10; PHD finger 2 found in PHD finger protein 10 (PHF10) and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      103494503..103515042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024996476.2 → XP_024852244.2  PHD finger protein 10 isoform X1

      UniProtKB/TrEMBL
      A0A452DHY9
      Related
      ENSBTAP00070021712.1, ENSBTAT00070036921.1

    2. XM_024996477.2 → XP_024852245.1  PHD finger protein 10 isoform X2

      UniProtKB/TrEMBL
      A0A452DHY9
      Conserved Domains (2) summary
      cd15528
      Location:333 → 386
      PHD1_PHF10; PHD finger 1 found in PHD finger protein 10 (PHF10) and similar proteins
      cd15529
      Location:388 → 431
      PHD2_PHF10; PHD finger 2 found in PHD finger protein 10 (PHF10) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2T9V9.1 GenPept UniProtKB/Swiss-Prot:Q2T9V9

    Gene LinkOut

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