U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ACSL6 acyl-CoA synthetase long chain family member 6 [ Bos taurus (domestic cattle) ]

    Gene ID: 506059, updated on 1-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    ACSL6provided by VGNC
    Official Full Name
    acyl-CoA synthetase long chain family member 6provided by VGNC
    Primary source
    VGNC:VGNC:55153
    See related
    BGD:BT16034; Ensembl:ENSBTAG00000019708
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ACSL6 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (22477874..22541091)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene colony stimulating factor 2 Neighboring gene interleukin 3 Neighboring gene meiotic kinetochore factor Neighboring gene folliculin interacting protein 1 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC134527

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables long-chain fatty acid-CoA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in long-chain fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    long-chain-fatty-acid--CoA ligase 6
    NP_001033131.1
    XP_005209088.1
    XP_005209089.1
    XP_059743971.1
    XP_059743972.1
    XP_059743973.1
    XP_059743974.1
    XP_059743975.1
    XP_059743976.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038042.2 → NP_001033131.1  long-chain-fatty-acid--CoA ligase 6

      Status: PROVISIONAL

      Source sequence(s)
      BC111155
      UniProtKB/TrEMBL
      F6RBE8, Q2TA22
      Related
      ENSBTAP00000069423.2, ENSBTAT00000086573.2
      Conserved Domains (1) summary
      cd05927
      Location:116 → 693
      LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22477874..22541091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059887992.1 → XP_059743975.1  long-chain-fatty-acid--CoA ligase 6 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LT97

    2. XM_059887988.1 → XP_059743971.1  long-chain-fatty-acid--CoA ligase 6 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LT97, A0A3Q1NEA4
      Related
      ENSBTAP00000069915.2, ENSBTAT00000084313.2

    3. XM_059887990.1 → XP_059743973.1  long-chain-fatty-acid--CoA ligase 6 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LT97

    4. XM_059887993.1 → XP_059743976.1  long-chain-fatty-acid--CoA ligase 6 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LT97

    5. XM_059887991.1 → XP_059743974.1  long-chain-fatty-acid--CoA ligase 6 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LT97

    6. XM_059887989.1 → XP_059743972.1  long-chain-fatty-acid--CoA ligase 6 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LT97

    7. XM_005209031.5 → XP_005209088.1  long-chain-fatty-acid--CoA ligase 6 isoform X7

      UniProtKB/TrEMBL
      A0A3Q1LPX2, A0A3Q1ND65
      Related
      ENSBTAP00000062166.1, ENSBTAT00000080693.2
      Conserved Domains (1) summary
      cd05927
      Location:141 → 718
      LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

    8. XM_005209032.5 → XP_005209089.1  long-chain-fatty-acid--CoA ligase 6 isoform X6

      UniProtKB/TrEMBL
      A0A3Q1MNF0, A0A3Q1MT90
      Related
      ENSBTAP00000073477.2, ENSBTAT00000075041.2
      Conserved Domains (1) summary
      cd05927
      Location:141 → 718
      LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.