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    SmydA-6 SET and MYND domain containing, arthropod-specific, member 6 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36917, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SmydA-6provided by FlyBase
    Official Full Name
    SET and MYND domain containing, arthropod-specific, member 6provided by FlyBase
    Primary source
    FLYBASE:FBgn0034183
    Locus tag
    Dmel_CG9642
    See related
    AllianceGenome:FB:FBgn0034183
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG9642; Dmel\CG9642
    Summary
    Predicted to enable histone deacetylase binding activity. Predicted to be involved in negative regulation of gene expression. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See SmydA-6 in Genome Data Viewer
    Location:
    53F1-53F2; 2-81 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (17046839..17048794)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (12934344..12936299)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 2 Neighboring gene antisense RNA:CR45145 Neighboring gene SET and MYND domain containing, arthropod-specific, member 7 Neighboring gene uncharacterized protein Neighboring gene fat-spondin Neighboring gene teflon

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary History of the Smyd Gene Family in Metazoans: A Framework to Identify the Orthologs of Human Smyd Genes in Drosophila and Other Animal Species. Calpena E, et al. PLoS One, 2015. PMID 26230726, Free PMC Article
    2. A Drosophila Smyd4 homologue is a muscle-specific transcriptional modulator involved in development. Thompson EC, et al. PLoS One, 2008 Aug 20. PMID 18714374, Free PMC Article
    3. Comparative genomic analysis of SET domain family reveals the origin, expansion, and putative function of the arthropod-specific SmydA genes as histone modifiers in insects. Jiang F, et al. Gigascience, 2017 Jun 1. PMID 28444351, Free PMC Article
    4. A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. Schotta G, et al. Genes Dev, 2004 Jun 1. PMID 15145825, Free PMC Article
    5. Genome features of "Dark-fly", a Drosophila line reared long-term in a dark environment. Izutsu M, et al. PLoS One, 2012. PMID 22432011, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables histone deacetylase binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein-lysine N-methyltransferase activity NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of gene expression ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SET and MYND domain containing, arthropod-specific, member 6
    Names
    CG9642-PA
    SmydA-6-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      17046839..17048794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137338.2 → NP_611182.1  SET and MYND domain containing, arthropod-specific, member 6 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611182.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1ZAP0
      Related
      FBpp0086127
      Conserved Domains (1) summary
      pfam00856
      Location:179 → 244
      SET; SET domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1ZAP0 A1ZAP0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
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