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    Sox5os3 SRY (sex determining region Y)-box 5, opposite strand 3 [ Mus musculus (house mouse) ]

    Gene ID: 66760, updated on 22-Oct-2024

    Summary

    Official Symbol
    Sox5os3provided by MGI
    Official Full Name
    SRY (sex determining region Y)-box 5, opposite strand 3provided by MGI
    Primary source
    MGI:MGI:1914010
    See related
    Ensembl:ENSMUSG00000085785 AllianceGenome:MGI:1914010
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933425H06Rik
    Expression
    Restricted expression toward testis adult (RPKM 28.9) See more
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    Genomic context

    See Sox5os3 in Genome Data Viewer
    Location:
    6 G3; 6 77.03 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (144618594..144639558)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (144672868..144693832)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene SRY (sex determining region Y)-box 5 Neighboring gene predicted gene, 52485 Neighboring gene STARR-seq mESC enhancer starr_17748 Neighboring gene STARR-seq mESC enhancer starr_17751 Neighboring gene predicted gene, 38531 Neighboring gene STARR-seq mESC enhancer starr_17756 Neighboring gene STARR-seq mESC enhancer starr_17757 Neighboring gene STARR-seq mESC enhancer starr_17758 Neighboring gene STARR-positive B cell enhancer ABC_E10417 Neighboring gene STARR-positive B cell enhancer mm9_chr6:144637695-144637995 Neighboring gene STARR-seq mESC enhancer starr_17759 Neighboring gene SRY (sex determining region Y)-box 5, opposite strand 4 Neighboring gene predicted gene, 32124 Neighboring gene predicted gene, 22792

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Other Names

    • Sox5 opposite strand transcript 3

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040519.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK006194, AK016914
      Related
      ENSMUST00000139351.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      144618594..144639558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)