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    5830428M24Rik RIKEN cDNA 5830428M24 gene [ Mus musculus (house mouse) ]

    Gene ID: 76062, updated on 22-Oct-2024

    Summary

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    Official Symbol
    5830428M24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5830428M24 geneprovided by MGI
    Primary source
    MGI:MGI:1923312
    See related
    Ensembl:ENSMUSG00000113035 AllianceGenome:MGI:1923312
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm3007; 100040862
    Expression
    Biased expression in lung adult (RPKM 2.9), thymus adult (RPKM 2.8) and 11 other tissues See more
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    Genomic context

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    See 5830428M24Rik in Genome Data Viewer
    Location:
    12 C2; 12 28.86 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (69511561..69522324, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (69464787..69475550, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10755 Neighboring gene ARF GTPase 6 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:70523938-70524137 Neighboring gene STARR-positive B cell enhancer ABC_E8486 Neighboring gene STARR-positive B cell enhancer ABC_E11513 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:70559664-70559829 Neighboring gene predicted gene, 40434 Neighboring gene STARR-positive B cell enhancer mm9_chr12:70576247-70576548 Neighboring gene predicted gene, 31512 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:70602988-70603097 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:70617614-70617767 Neighboring gene predicted gene, 46353

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The human (PEDB) and mouse (mPEDB) Prostate Expression Databases. Nelson PS, et al. Nucleic Acids Res, 2002 Jan 1. PMID 11752298, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038060.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK017954, AK039829, DV046824
      Related
      ENSMUST00000223143.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      69511561..69522324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_038061.1: Suppressed sequence

      Description
      NR_038061.1: This RefSeq was removed because currently there is insufficient support for the transcript.
    Nucleotide Protein Strain
    Heading Accession and Version

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