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    Mindy4b-ps MINDY lysine 48 deubiquitinase 4B, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 100040293, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Mindy4b-psprovided by MGI
    Official Full Name
    MINDY lysine 48 deubiquitinase 4B, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:2140018
    See related
    Ensembl:ENSMUSG00000101860 AllianceGenome:MGI:2140018
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MINDY4B; Fam188b2; Fam188b2-ps; 5330432B20Rik
    Summary
    Predicted to enable K48-linked deubiquitinase activity. Orthologous to human MINDY4B (MINDY family member 4B). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See Mindy4b-ps in Genome Data Viewer
    Location:
    3 D; 3 28.75 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (58697538..58727655, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (58790117..58822225, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930593A02 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:58494608-58494717 Neighboring gene siah E3 ubiquitin protein ligase 2 Neighboring gene STARR-positive B cell enhancer ABC_E7914 Neighboring gene STARR-positive B cell enhancer mm9_chr3:58559849-58560149 Neighboring gene CDGSH iron-sulfur domain-containing protein 2 pseudogene Neighboring gene predicted gene, 40059 Neighboring gene STARR-seq mESC enhancer starr_07757 Neighboring gene clarin 1 Neighboring gene STARR-seq mESC enhancer starr_07758

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables K48-linked deubiquitinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B
    Names
    family with sequence similarity 188, member B2, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      58697538..58727655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055019671.1 → XP_054875646.1  inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B

      UniProtKB/TrEMBL
      A0A1W2P7H6
      Related
      ENSMUSP00000151654.3, ENSMUST00000191233.4
    Nucleotide Protein Strain
    Heading Accession and Version

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