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    BC049715 cDNA sequence BC049715 [ Mus musculus (house mouse) ]

    Gene ID: 320135, updated on 9-Dec-2024

    Summary

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    Official Symbol
    BC049715provided by MGI
    Official Full Name
    cDNA sequence BC049715provided by MGI
    Primary source
    MGI:MGI:3605234
    See related
    Ensembl:ENSMUSG00000047515 AllianceGenome:MGI:3605234
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C12orf60 (chromosome 12 open reading frame 60). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 12.6) and liver E14.5 (RPKM 0.5) See more
    Orthologs
    human all
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    Genomic context

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    See BC049715 in Genome Data Viewer
    Location:
    6 G1; 6 66.72 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (136805158..136818918)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (136828160..136841920)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_17608 Neighboring gene H4 histone 16 Neighboring gene H2J.A histone Neighboring gene WW domain binding protein 11 Neighboring gene STARR-seq mESC enhancer starr_17611 Neighboring gene single-pass membrane protein with coiled-coil domains 3 Neighboring gene STARR-seq mESC enhancer starr_17612 Neighboring gene ADP-ribosyltransferase 4 Neighboring gene matrix Gla protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C12orf60 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178776.3 → NP_848891.2  uncharacterized protein C12orf60 homolog

      See identical proteins and their annotated locations for NP_848891.2

      Status: VALIDATED

      Source sequence(s)
      BC049715, BX638225
      Consensus CDS
      CCDS39685.1
      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Related
      ENSMUSP00000049512.7, ENSMUST00000052702.7
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      136805158..136818918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321634.2 → XP_017177123.1  uncharacterized protein C12orf60 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)

    2. XM_006506262.4 → XP_006506325.1  uncharacterized protein C12orf60 homolog isoform X1

      See identical proteins and their annotated locations for XP_006506325.1

      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)

    3. XM_006506265.4 → XP_006506328.1  uncharacterized protein C12orf60 homolog isoform X1

      See identical proteins and their annotated locations for XP_006506328.1

      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)

    4. XM_017321636.2 → XP_017177125.1  uncharacterized protein C12orf60 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)

    5. XM_006506264.4 → XP_006506327.1  uncharacterized protein C12orf60 homolog isoform X1

      See identical proteins and their annotated locations for XP_006506327.1

      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)

    6. XM_017321635.2 → XP_017177124.1  uncharacterized protein C12orf60 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)

    7. XM_006506263.4 → XP_006506326.1  uncharacterized protein C12orf60 homolog isoform X1

      See identical proteins and their annotated locations for XP_006506326.1

      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)

    8. XM_030255455.2 → XP_030111315.1  uncharacterized protein C12orf60 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)

    9. XM_006506266.4 → XP_006506329.1  uncharacterized protein C12orf60 homolog isoform X1

      See identical proteins and their annotated locations for XP_006506329.1

      UniProtKB/Swiss-Prot
      Q810N5, Q8C8R6
      Related
      ENSMUSP00000145015.2, ENSMUST00000203499.2
      Conserved Domains (1) summary
      pfam15047
      Location:9 → 235
      DUF4533; Protein of unknown function (DUF4533)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q810N5.1 GenPept UniProtKB/Swiss-Prot:Q810N5

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