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    CG42394 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 7354424, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CG42394provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0259740
    Locus tag
    Dmel_CG42394
    See related
    AllianceGenome:FB:FBgn0259740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG42394
    Orthologs
    all
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    Genomic context

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    See CG42394 in Genome Data Viewer
    Location:
    86C7-86C7; 3-50 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (10849825..10851788)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (6675547..6677510)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Tubulin tyrosine ligase-like 15 Neighboring gene Cadherin 86C Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The evolution of constitutively active humoral immune defenses in Drosophila populations under high parasite pressure. Zhou SO, et al. PLoS Pathog, 2024 Jan. PMID 38206983, Free PMC Article
    2. The molecular landscape of neural differentiation in the developing Drosophila brain revealed by targeted scRNA-seq and multi-informatic analysis. Michki NS, et al. Cell Rep, 2021 Apr 27. PMID 33909998, Free PMC Article
    3. Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila. Cho B, et al. Nat Commun, 2020 Sep 8. PMID 32900993, Free PMC Article
    4. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs. Li H, et al. DNA Res, 2016 Dec. PMID 27559081, Free PMC Article
    5. Microbiota-induced changes in drosophila melanogaster host gene expression and gut morphology. Broderick NA, et al. mBio, 2014 May 27. PMID 24865556, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42394-PA
    CG42394-PB
    CG42394-PC
    CG42394-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      10849825..10851788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001260106.2 → NP_001247035.1  uncharacterized protein Dmel_CG42394, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247035.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6IKC0
      Conserved Domains (1) summary
      cl01261
      Location:19 → 45
      DUF2062; Uncharacterized protein conserved in bacteria (DUF2062)

    2. NM_001300349.1 → NP_001287278.1  uncharacterized protein Dmel_CG42394, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287278.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6IKC0
      Conserved Domains (1) summary
      cl01261
      Location:19 → 45
      DUF2062; Uncharacterized protein conserved in bacteria (DUF2062)

    3. NM_001144563.2 → NP_001138035.1  uncharacterized protein Dmel_CG42394, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001138035.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6IKC0
      Conserved Domains (1) summary
      cl01261
      Location:19 → 45
      DUF2062; Uncharacterized protein conserved in bacteria (DUF2062)

    4. NM_001170113.1 → NP_001163584.1  uncharacterized protein Dmel_CG42394, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001163584.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6IKC0
      Conserved Domains (1) summary
      cl01261
      Location:19 → 45
      DUF2062; Uncharacterized protein conserved in bacteria (DUF2062)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6IKC0 Q6IKC0

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