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    Nicn1 nicolin 1, tubulin polyglutamylase complex subunit [ Rattus norvegicus (Norway rat) ]

    Gene ID: 619581, updated on 9-Dec-2024

    Summary

    Official Symbol
    Nicn1provided by RGD
    Official Full Name
    nicolin 1, tubulin polyglutamylase complex subunitprovided by RGD
    Primary source
    RGD:1589574
    See related
    EnsemblRapid:ENSRNOG00000049083 AllianceGenome:RGD:1589574
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be active in nucleoplasm. Orthologous to human NICN1 (nicolin 1, tubulin polyglutamylase complex subunit). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 216.0), Brain (RPKM 163.9) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Nicn1 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (117854210..117860185)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (108976393..108981620)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117062989..117068134)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene bassoon (presynaptic cytomatrix protein) Neighboring gene dystroglycan 1 Neighboring gene small nuclear ribonucleoprotein D2 polypeptide, pseudogene 3 Neighboring gene U6 snRNA-associated Sm-like protein LSm3 Neighboring gene aminomethyltransferase Neighboring gene T-cell leukemia translocation altered Neighboring gene ras homolog family member A

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in nucleoplasm  
    located_in nucleoplasm  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034999.1NP_001030171.1  nicolin-1

      See identical proteins and their annotated locations for NP_001030171.1

      Status: PROVISIONAL

      Source sequence(s)
      BC101861
      UniProtKB/TrEMBL
      A0A0G2JW73, Q3T1K9
      Related
      ENSRNOP00000107471.1, ENSRNOT00000134058.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      117854210..117860185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039082065.2XP_038937993.1  nicolin-1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JW73
      Related
      ENSRNOP00000069769.3, ENSRNOT00000082452.3
    2. XM_039082066.2XP_038937994.1  nicolin-1 isoform X2

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