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    Fam131b family with sequence similarity 131, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500102, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fam131bprovided by RGD
    Official Full Name
    family with sequence similarity 131, member Bprovided by RGD
    Primary source
    RGD:1560653
    See related
    EnsemblRapid:ENSRNOG00000017149 AllianceGenome:RGD:1560653
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytosol and nucleoplasm. Orthologous to human FAM131B (family with sequence similarity 131 member B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 215.9) and Muscle (RPKM 100.7) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fam131b in Genome Data Viewer
    Location:
    4q24
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (72167667..72176924, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (71201037..71210292, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (71703872..71713268, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 139 Neighboring gene small nucleolar RNA SNORD88 Neighboring gene caspase 2 Neighboring gene chloride voltage-gated channel 1 Neighboring gene uncharacterized LOC120102260 Neighboring gene zyxin Neighboring gene Eph receptor A1 Neighboring gene uncharacterized LOC120102261

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM131B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025046.1 → NP_001020217.2  protein FAM131B

      Status: VALIDATED

      Source sequence(s)
      BC092642
      UniProtKB/Swiss-Prot
      Q568Z1
      UniProtKB/TrEMBL
      A6IF72, F8WFH6
      Related
      ENSRNOP00000056203.1, ENSRNOT00000059447.3
      Conserved Domains (1) summary
      pfam15010
      Location:67 → 353
      FAM131; Putative cell signalling

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      72167667..72176924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017592788.3 → XP_017448277.1  protein FAM131B isoform X1

      UniProtKB/Swiss-Prot
      Q568Z1
      UniProtKB/TrEMBL
      A0A8I6AQS3, A6IF72
      Related
      ENSRNOP00000096432.2, ENSRNOT00000100243.2

    2. XM_063286506.1 → XP_063142576.1  protein FAM131B isoform X2

      UniProtKB/Swiss-Prot
      Q568Z1
      UniProtKB/TrEMBL
      A6IF72
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q568Z1.1 GenPept UniProtKB/Swiss-Prot:Q568Z1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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