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    Cmss1 cms1 ribosomal small subunit homolog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288176, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cmss1provided by RGD
    Official Full Name
    cms1 ribosomal small subunit homologprovided by RGD
    Primary source
    RGD:1309437
    See related
    EnsemblRapid:ENSRNOG00000027888 AllianceGenome:RGD:1309437
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309437
    Summary
    Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 84.2), Thymus (RPKM 65.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cmss1 in Genome Data Viewer
    Location:
    11q12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (56403620..56701751)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (42934390..43232624)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (45031627..45330481)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene collagen type VIII alpha 1 chain Neighboring gene filamin A interacting protein 1-like Neighboring gene uncharacterized LOC134481062 Neighboring gene uncharacterized LOC134481063 Neighboring gene transmembrane protein 30C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
    2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC108788

    General protein information

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    Preferred Names
    protein CMSS1
    Names
    uncharacterized protein C3orf26 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013866.1 → NP_001013888.1  protein CMSS1

      See identical proteins and their annotated locations for NP_001013888.1

      Status: PROVISIONAL

      Source sequence(s)
      BC089826
      UniProtKB/Swiss-Prot
      Q5FVR6
      UniProtKB/TrEMBL
      A0A0H2UHT9, A6IQM4
      Related
      ENSRNOP00000094701.1, ENSRNOT00000106111.2
      Conserved Domains (1) summary
      cl21455
      Location:105 → 258
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      56403620..56701751
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270410.1 → XP_063126480.1  protein CMSS1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6ANA9
      Related
      ENSRNOP00000031451.6, ENSRNOT00000031464.6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5FVR6.1 GenPept UniProtKB/Swiss-Prot:Q5FVR6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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