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    CLUHP3 clustered mitochondria homolog pseudogene 3 [ Homo sapiens (human) ]

    Gene ID: 100132341, updated on 10-Dec-2024

    Summary

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    Official Symbol
    CLUHP3provided by HGNC
    Official Full Name
    clustered mitochondria homolog pseudogene 3provided by HGNC
    Primary source
    HGNC:HGNC:28447
    See related
    Ensembl:ENSG00000290927 AllianceGenome:HGNC:28447
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    URLC3; C16orf67; KIAA0664L3; KIAA0664P3
    Expression
    Ubiquitous expression in lymph node (RPKM 5.2), thyroid (RPKM 4.9) and 25 other tissues See more
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    Genomic context

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    See CLUHP3 in Genome Data Viewer
    Location:
    16p11.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (31700594..31707714)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (32087987..32095104)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (31711915..31719035)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 66 pseudogene Neighboring gene RNA binding motif protein 22 pseudogene 12 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10766 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7424 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7425 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:31719202-31719702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10767 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10768 Neighboring gene KRAB box domain containing 5 Neighboring gene uncharacterized LOC107983990

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A proteome-scale map of the SARS-CoV-2-human contactome. Kim DK, et al. Nat Biotechnol, 2023 Jan. PMID 36217029, Free PMC Article
    2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    3. Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. Haenig C, et al. Cell Rep, 2020 Aug 18. PMID 32814053
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • KIAA0664-like 3
    • clustered mitochondria (cluA/CLU1) homolog pseudogene 3
    • up-regulated in lung cancer 3

    Clone Names

    • MGC3020, FLJ30136, KIAA0664, MGC31812

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024034.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC074050
      Related
      ENST00000254109.11

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      31700594..31707714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      32087987..32095104
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_026408.1: Suppressed sequence

      Description
      NG_026408.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    2. NM_024048.2: Suppressed sequence

      Description
      NM_024048.2: This RefSeq was permanently suppressed because it is a nonsense-mediated decay (NMD) candidate.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96NS8.1 GenPept UniProtKB/Swiss-Prot:Q96NS8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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    Research Materials