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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_007097.2 RefSeqGene
- Range
-
4621..74467
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001413013.1 → NP_001399942.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform c
Status: REVIEWED
- Source sequence(s)
-
AC006088
- UniProtKB/TrEMBL
-
H7C5W9
-
NM_001413014.1 → NP_001399943.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform d
Status: REVIEWED
- Source sequence(s)
-
AC006088
- UniProtKB/TrEMBL
-
H7C5W9
-
NM_001413015.1 → NP_001399944.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform e
Status: REVIEWED
- Source sequence(s)
-
AC006088
- UniProtKB/TrEMBL
-
H7C5W9
- Related
- ENSP00000449454.2, ENST00000548169.2
-
NM_001681.4 → NP_001672.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform a
See identical proteins and their annotated locations for NP_001672.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (a) differs in the 3' coding region and 3' UTR, resulting in an alternate termination codon, compared to variant 1. The encoded isoform (a, also known as SERCA2a, S2a or HK2) has a shorter and distinct C-terminus, compared to isoform b.
- Source sequence(s)
-
AK000300, BG773489, BI553880, M23115
- Consensus CDS
-
CCDS9143.1
- UniProtKB/TrEMBL
-
H7C5W9
- Related
- ENSP00000311186.6, ENST00000308664.10
- Conserved Domains (1) summary
-
- cd02083
Location:5 → 988
- P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3
-
NM_170665.4 → NP_733765.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform b
See identical proteins and their annotated locations for NP_733765.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (b) represents the longest transcript and encodes the longest isoform (b, also known as SERCA2b, S2b or HK1).
- Source sequence(s)
-
AK000300, BC035588, BG773489, BI553880, BX648282
- Consensus CDS
-
CCDS9144.1
- UniProtKB/Swiss-Prot
- A6NDN7, B4DF05, P16614, P16615, Q86VJ2
- UniProtKB/TrEMBL
- A0A0S2Z3L2, H7C5W9
- Related
- ENSP00000440045.2, ENST00000539276.7
- Conserved Domains (1) summary
-
- cd02083
Location:5 → 988
- P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
110280616..110351093
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011538402.4 → XP_011536704.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform X1
See identical proteins and their annotated locations for XP_011536704.1
- UniProtKB/TrEMBL
-
H7C5W9
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 988
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:93 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:783 → 986
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:605 → 711
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 527
- Cation_ATPase; Cation transport ATPase (P-type)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
110258258..110328744
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054372123.1 → XP_054228098.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform X1
- UniProtKB/TrEMBL
-
H7C5W9
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001135765.1: Suppressed sequence
- Description
- NM_001135765.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.