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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_021431.2 RefSeqGene
- Range
-
5037..120412
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_006089.3 → NP_006080.1 sex comb on midleg-like protein 2
See identical proteins and their annotated locations for NP_006080.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the functional protein.
- Source sequence(s)
-
BC040497, BC064617
- Consensus CDS
-
CCDS14185.1
- UniProtKB/Swiss-Prot
- Q5JXE6, Q86U98, Q8IWD0, Q8NDP2, Q9UGC5, Q9UQR0
- UniProtKB/TrEMBL
- B4DZR9, E7ERN2
- Related
- ENSP00000251900.4, ENST00000251900.9
- Conserved Domains (4) summary
-
- cd09578
Location:625 → 696
- SAM_Scm; SAM domain of Scm proteins of Polycomb group
- smart00454
Location:628 → 696
- SAM; Sterile alpha motif
- smart00561
Location:142 → 240
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:356 → 465
- DUF3588; Protein of unknown function (DUF3588)
RNA
-
NR_033717.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an internal segment, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
BC040497, BC051913
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
18239313..18355118 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017029219.2 → XP_016884708.1 sex comb on midleg-like protein 2 isoform X1
- UniProtKB/Swiss-Prot
- Q5JXE6, Q86U98, Q8IWD0, Q8NDP2, Q9UGC5, Q9UQR0
- UniProtKB/TrEMBL
- B4DZR9, E7ERN2
- Conserved Domains (4) summary
-
- cd09578
Location:625 → 696
- SAM_Scm; SAM domain of Scm proteins of Polycomb group
- smart00454
Location:628 → 696
- SAM; Sterile alpha motif
- smart00561
Location:142 → 240
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:356 → 465
- DUF3588; Protein of unknown function (DUF3588)
-
XM_006724458.1 → XP_006724521.1 sex comb on midleg-like protein 2 isoform X2
- UniProtKB/TrEMBL
- B4DZR9, E7ERN2
- Conserved Domains (2) summary
-
- smart00561
Location:142 → 240
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:356 → 465
- DUF3588; Protein of unknown function (DUF3588)
-
XM_017029220.3 → XP_016884709.1 sex comb on midleg-like protein 2 isoform X1
- UniProtKB/Swiss-Prot
- Q5JXE6, Q86U98, Q8IWD0, Q8NDP2, Q9UGC5, Q9UQR0
- UniProtKB/TrEMBL
- B4DZR9, E7ERN2
- Conserved Domains (4) summary
-
- cd09578
Location:625 → 696
- SAM_Scm; SAM domain of Scm proteins of Polycomb group
- smart00454
Location:628 → 696
- SAM; Sterile alpha motif
- smart00561
Location:142 → 240
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:356 → 465
- DUF3588; Protein of unknown function (DUF3588)
-
XM_017029222.2 → XP_016884711.1 sex comb on midleg-like protein 2 isoform X3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
17821927..17937732 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054326365.1 → XP_054182340.1 sex comb on midleg-like protein 2 isoform X1
- UniProtKB/Swiss-Prot
- Q5JXE6, Q86U98, Q8IWD0, Q8NDP2, Q9UGC5, Q9UQR0
- UniProtKB/TrEMBL
- B4DZR9, E7ERN2
-
XM_054326367.1 → XP_054182342.1 sex comb on midleg-like protein 2 isoform X2
- UniProtKB/TrEMBL
- B4DZR9, E7ERN2
-
XM_054326366.1 → XP_054182341.1 sex comb on midleg-like protein 2 isoform X1
- UniProtKB/Swiss-Prot
- Q5JXE6, Q86U98, Q8IWD0, Q8NDP2, Q9UGC5, Q9UQR0
- UniProtKB/TrEMBL
- B4DZR9, E7ERN2
-
XM_054326368.1 → XP_054182343.1 sex comb on midleg-like protein 2 isoform X3