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    Gm5546 predicted gene 5546 [ Mus musculus (house mouse) ]

    Gene ID: 433634, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Gm5546provided by MGI
    Official Full Name
    predicted gene 5546provided by MGI
    Primary source
    MGI:MGI:3648205
    See related
    AllianceGenome:MGI:3648205
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG433634
    Summary
    Is expressed in dorsal root ganglion; facial ganglion; and trigeminal ganglion. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm5546 in Genome Data Viewer
    Location:
    3 F2.2; 3 45.57 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (104258782..104267634, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (104351466..104360318, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 3 Neighboring gene STARR-positive B cell enhancer ABC_E9565 Neighboring gene predicted gene, 17956 Neighboring gene STARR-positive B cell enhancer ABC_E1628 Neighboring gene STARR-seq mESC enhancer starr_08607 Neighboring gene predicted gene, 23077 Neighboring gene STARR-seq mESC enhancer starr_08609 Neighboring gene STARR-seq mESC enhancer starr_08610 Neighboring gene STARR-seq mESC enhancer starr_08611 Neighboring gene STARR-positive B cell enhancer ABC_E4569 Neighboring gene predicted gene, 38412 Neighboring gene STARR-seq mESC enhancer starr_08613 Neighboring gene STARR-seq mESC enhancer starr_08614 Neighboring gene STARR-seq mESC enhancer starr_08615 Neighboring gene phosducin-like 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_08617 Neighboring gene STARR-positive B cell enhancer ABC_E4570 Neighboring gene leucine-rich repeats and immunoglobulin-like domains 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      104258782..104267634 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_867541.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001013805.1: Suppressed sequence

      Description
      NM_001013805.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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