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    Cont Contactin [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40553, updated on 17-Dec-2024

    Summary

    Official Symbol
    Contprovided by FlyBase
    Official Full Name
    Contactinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0037240
    Locus tag
    Dmel_CG1084
    See related
    AllianceGenome:FB:FBgn0037240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG1084; cont; CONT; CT1481; D-Axonin; DCONT; Dmel\CG1084
    Summary
    Predicted to enable cell-cell adhesion mediator activity. Involved in cell adhesion involved in heart morphogenesis; nervous system development; and septate junction assembly. Located in septate junction. Is expressed in several structures, including adult head; adult heart; follicle cell; gut section; and sensory organ cell. Human ortholog(s) of this gene implicated in Compton-North congenital myopathy and familial adult myoclonic epilepsy 5. Orthologous to several human genes including CNTN4 (contactin 4) and CNTN6 (contactin 6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See Cont in Genome Data Viewer
    Location:
    82A5-82A5; 3-47.1 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (4381306..4387018)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (207028..212740)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44922 Neighboring gene Sideroflexin 1/3 Neighboring gene tube Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in axon IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane HDA PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in septate junction IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    contactin
    Names
    CG1084-PA
    Cont-PA
    D-Contactin
    dcontactin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      4381306..4387018
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_141204.4NP_649461.2  contactin [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649461.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5BI91, Q8SWW3, Q9VN14
      UniProtKB/TrEMBL
      C4IXZ0
      Related
      FBpp0078557
      Conserved Domains (7) summary
      smart00408
      Location:586645
      IGc2; Immunoglobulin C-2 Type
      smart00034
      Location:139223
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      smart00410
      Location:765844
      IG_like; Immunoglobulin like
      cd00063
      Location:9441043
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:362462
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:12591346
      fn3; Fibronectin type III domain
      cl11960
      Location:466559
      Ig; Immunoglobulin domain