U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG42272 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 318020, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG42272provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0259167
    Locus tag
    Dmel_CG42272
    See related
    AllianceGenome:FB:FBgn0259167
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG32415; CG32416; Dmel\CG42272
    Old locus tag
    Dmel_CG32415; Dmel_CG32416
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG42272 in Genome Data Viewer
    Location:
    64E8-64E11; 3-15 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (5803033..5805749)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (5796133..5798849)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Bre1 Neighboring gene Tektin C Neighboring gene Ribosomal protein S6 kinase Neighboring gene krishah Neighboring gene mad2 Neighboring gene vein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Genetic Basis of Natural Variation in Drosophila melanogaster Immune Defense against Enterococcus faecalis. Chapman JR, et al. Genes (Basel), 2020 Feb 22. PMID 32098395, Free PMC Article
    2. Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. Blanco E, et al. BMC Dev Biol, 2010 Sep 2. PMID 20813047, Free PMC Article
    3. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848
    4. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
    5. The Release 6 reference sequence of the Drosophila melanogaster genome. Hoskins RA, et al. Genome Res, 2015 Mar. PMID 25589440, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG42272-PC
    CG42272-PE

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      5803033..5805749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_168141.2 → NP_729101.2  uncharacterized protein Dmel_CG42272, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_729101.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q29QK8, Q8IQ55
      Conserved Domains (1) summary
      pfam06101
      Location:367 → 437
      DUF946; Plant protein of unknown function (DUF946)

    2. NM_168142.2 → NP_729102.2  uncharacterized protein Dmel_CG42272, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_729102.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5BHW3, Q8IQ54
      Conserved Domains (1) summary
      pfam06101
      Location:217 → 287
      DUF946; Plant protein of unknown function (DUF946)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BHW3 Q5BHW3
    Q8IQ54 Q8IQ54
    Q8IQ55 Q8IQ55

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools