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    CG13894 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38086, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13894provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0035157
    Locus tag
    Dmel_CG13894
    See related
    AllianceGenome:FB:FBgn0035157
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    dmCG13894; Dmel\CG13894
    Summary
    Is expressed in several structures, including amnioserosa primordium; anlage in statu nascendi; cuboidal/columnar epithelium; ganglia; and head epidermis primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13894 in Genome Data Viewer
    Location:
    61C8-61C8; 3-0.5 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (693083..699144, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (693083..699144, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene RabX6 Neighboring gene Vesicle transport through interaction with t-SNAREs 1a Neighboring gene long non-coding RNA:CR44514 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element. Quesneville H, et al. Mol Biol Evol, 2005 Mar. PMID 15574804
    2. A gain-of-function screen identifies wdb and lkb1 as lifespan-extending genes in Drosophila. Funakoshi M, et al. Biochem Biophys Res Commun, 2011 Feb 25. PMID 21281604
    3. The THAP domain: a novel protein motif with similarity to the DNA-binding domain of P element transposase. Roussigne M, et al. Trends Biochem Sci, 2003 Feb. PMID 12575992
    4. Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo. Haines JE, et al. PLoS Genet, 2018 May. PMID 29727464, Free PMC Article
    5. Sox21b underlies the rapid diversification of a novel male genital structure between Drosophila species. Ridgway AM, et al. Curr Biol, 2024 Mar 11. PMID 38309269

    See all (32) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13894-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      693083..699144 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_138210.2 → NP_612054.1  uncharacterized protein Dmel_CG13894 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_612054.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MQY8, Q9W0N5
      Related
      FBpp0072502
      Conserved Domains (3) summary
      smart00674
      Location:104 → 165
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      smart00980
      Location:6 → 82
      THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
      pfam13945
      Location:382 → 468
      NST1; Salt tolerance down-regulator
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8MQY8 Q8MQY8
    Q9W0N5 Q9W0N5

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