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    CG42534 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43298, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CG42534provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0260487
    Locus tag
    Dmel_CG42534
    See related
    AllianceGenome:FB:FBgn0260487
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13980; CG14264; CG6599; Dmel\CG42534
    Old locus tag
    Dmel_CG13980; Dmel_CG14264; Dmel_CG6599
    Orthologs
    all
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    Genomic context

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    See CG42534 in Genome Data Viewer
    Location:
    97F4-97F6; 3-93 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (27340622..27372574)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (23166344..23198296)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR44287 Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR43476 Neighboring gene uncharacterized protein Neighboring gene sidestep Neighboring gene long non-coding RNA:CR45991 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide phenotypic RNAi screen in the Drosophila wing: global parameters. López-Varea A, et al. G3 (Bethesda), 2021 Dec 8. PMID 34599819, Free PMC Article
    2. The genetic basis of natural variation in mushroom body size in Drosophila melanogaster. Zwarts L, et al. Nat Commun, 2015 Dec 11. PMID 26656654, Free PMC Article
    3. Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. Lowe N, et al. Development, 2014 Oct. PMID 25294943, Free PMC Article
    4. Vector and parameters for targeted transgenic RNA interference in Drosophila melanogaster. Ni JQ, et al. Nat Methods, 2008 Jan. PMID 18084299, Free PMC Article
    5. Genome-wide analysis in Drosophila reveals age-specific effects of SNPs on fitness traits. Durham MF, et al. Nat Commun, 2014 Jul 8. PMID 25000897

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42534-PC
    CG42534-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      27340622..27372574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143303.3 → NP_651560.2  uncharacterized protein Dmel_CG42534, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651560.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VB40
      Conserved Domains (4) summary
      cd00204
      Location:345 → 468
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:319 → 412
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:214 → 269
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:381 → 412
      ANK; ANK repeat [structural motif]

    2. NM_001260404.1 → NP_001247333.1  uncharacterized protein Dmel_CG42534, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247333.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4K794
      Conserved Domains (3) summary
      cd00204
      Location:220 → 343
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:194 → 287
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:256 → 287
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4K794 A0A0B4K794
    Q9VB40 Q9VB40

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