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    Obp50d Odorant-binding protein 50d [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 246436, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Obp50dprovided by FlyBase
    Official Full Name
    Odorant-binding protein 50dprovided by FlyBase
    Primary source
    FLYBASE:FBgn0050074
    Locus tag
    Dmel_CG30074
    See related
    AllianceGenome:FB:FBgn0050074
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG30074; DmelObp50d; Dmel\CG30074
    Summary
    Predicted to enable odorant binding activity. Predicted to be involved in sensory perception of chemical stimulus. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Obp50d in Genome Data Viewer
    Location:
    50F6-50F6; 2-70 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (14373108..14373808)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (10260613..10261313)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Odorant-binding protein 50a Neighboring gene Odorant-binding protein 50c Neighboring gene Odorant-binding protein 50b Neighboring gene uncharacterized protein Neighboring gene Odorant-binding protein 50e

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Diversification, Redundancy, and Epistasis among Paralogs of the Drosophila melanogaster Obp50a-d Gene Cluster. Johnstun JA, et al. Mol Biol Evol, 2021 May 4. PMID 33560417, Free PMC Article
    2. "Plus-C" odorant-binding protein genes in two Drosophila species and the malaria mosquito Anopheles gambiae. Zhou JJ, et al. Gene, 2004 Feb 18. PMID 14960367
    3. Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes. Librado P, et al. Genome Biol Evol, 2013. PMID 24148943, Free PMC Article
    4. Genome-wide analysis of the odorant-binding protein gene family in Drosophila melanogaster. Hekmat-Scafe DS, et al. Genome Res, 2002 Sep. PMID 12213773, Free PMC Article
    5. Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution. Vieira FG, et al. Genome Biol, 2007. PMID 18039354, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables odorant binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sensory perception of chemical stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Odorant-binding protein 50d
    Names
    CG30074-PA
    Obp50d-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      14373108..14373808
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_166053.3 → NP_725388.2  Odorant-binding protein 50d [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725388.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z9Q5, D9PTU1
      Related
      FBpp0086682
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z9Q5 A1Z9Q5

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