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    Skadu skadu [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 8673966, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Skaduprovided by FlyBase
    Official Full Name
    skaduprovided by FlyBase
    Primary source
    FLYBASE:FBgn0259922
    Locus tag
    Dmel_CG42448
    See related
    AllianceGenome:FB:FBgn0259922
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG42448; Dmel\CG42448; SKADU
    Summary
    Predicted to enable chromatin binding activity. Predicted to be involved in chromosome organization. Predicted to be located in chromatin. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Skadu in Genome Data Viewer
    Location:
    35D3-35D3; 2-51 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (15547519..15548243)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (15547519..15548243)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44864 Neighboring gene long non-coding RNA:CR43761 Neighboring gene long non-coding RNA:CR45728 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A rapidly evolving genomic toolkit for Drosophila heterochromatin. Levine MT, et al. Fly (Austin), 2013 Jul-Sep. PMID 23519206, Free PMC Article
    2. Achiasmy: Male Fruit Flies Are Not Ready to Mix. John A, et al. Front Cell Dev Biol, 2016. PMID 27486580, Free PMC Article
    3. Phylogenomic analysis reveals dynamic evolutionary history of the Drosophila heterochromatin protein 1 (HP1) gene family. Levine MT, et al. PLoS Genet, 2012. PMID 22737079, Free PMC Article
    4. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article
    5. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables chromatin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromosome organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromatin ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    skadu
    Names
    CG42448-PA
    Skadu-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      15547519..15548243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001169514.2 → NP_001162985.1  skadu [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001162985.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0P8M9
      Conserved Domains (1) summary
      cl00044
      Location:68 → 116
      ChSh; Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C0P8M9 C0P8M9

    Gene LinkOut

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