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    CG1943 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40844, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG1943provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0037468
    Locus tag
    Dmel_CG1943
    See related
    AllianceGenome:FB:FBgn0037468
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG1943
    Summary
    Involved in wing disc dorsal/ventral pattern formation. Is expressed in embryonic brain and organism. Used to study congenital heart disease. Orthologous to human JPT1 (Jupiter microtubule associated homolog 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG1943 in Genome Data Viewer
    Location:
    84B2-84B2; 3-48 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (7074859..7077981)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (2900581..2903703)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene UFM1 specific ligase 1 Neighboring gene antisense RNA:CR45908 Neighboring gene RNA and export factor binding protein 1 Neighboring gene Dephospho-CoA kinase Neighboring gene tailor Neighboring gene antisense RNA:CR45907

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Patient-specific genomics and cross-species functional analysis implicate LRP2 in hypoplastic left heart syndrome. Theis JL, et al. Elife, 2020 Oct 2. PMID 33006316, Free PMC Article
    2. Stable pausing by RNA polymerase II provides an opportunity to target and integrate regulatory signals. Henriques T, et al. Mol Cell, 2013 Nov 21. PMID 24184211, Free PMC Article
    3. The effect of neurospecific knockdown of candidate genes for locomotor behavior and sound production in Drosophila melanogaster. Fedotov SA, et al. Fly (Austin), 2014. PMID 25494872, Free PMC Article
    4. Mating induces an immune response and developmental switch in the Drosophila oviduct. Kapelnikov A, et al. Proc Natl Acad Sci U S A, 2008 Sep 16. PMID 18725632, Free PMC Article
    5. Drosophila model for studying the link between lipid metabolism and development. Thanh MT, et al. Front Biosci (Landmark Ed), 2020 Jan 1. PMID 31585882

    See all (39) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in wing disc dorsal/ventral pattern formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG1943-PA
    CG1943-PB
    CG1943-PC
    CG1943-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      7074859..7077981
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275397.1 → NP_001262326.1  uncharacterized protein Dmel_CG1943, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262326.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VI56
      Conserved Domains (1) summary
      pfam03159
      Location:41 → 92
      XRN_N; XRN 5'-3' exonuclease N-terminus

    2. NM_141434.2 → NP_649691.1  uncharacterized protein Dmel_CG1943, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649691.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VI56
      Related
      FBpp0081149
      Conserved Domains (1) summary
      pfam03159
      Location:41 → 92
      XRN_N; XRN 5'-3' exonuclease N-terminus

    3. NM_169166.2 → NP_731126.1  uncharacterized protein Dmel_CG1943, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731126.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VI56
      Related
      FBpp0081150
      Conserved Domains (1) summary
      pfam03159
      Location:41 → 92
      XRN_N; XRN 5'-3' exonuclease N-terminus

    4. NM_169167.2 → NP_731127.1  uncharacterized protein Dmel_CG1943, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731127.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VI56
      Related
      FBpp0081151
      Conserved Domains (1) summary
      pfam03159
      Location:41 → 92
      XRN_N; XRN 5'-3' exonuclease N-terminus
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VI56 Q9VI56

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