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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001310502.1 → NP_001297431.1 ankyrin repeat and LEM domain-containing protein 1 isoform 2
See identical proteins and their annotated locations for NP_001297431.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
- Source sequence(s)
-
AK083552, BC094316, CJ046325, EU184014
- Consensus CDS
-
CCDS80893.1
- UniProtKB/Swiss-Prot
-
A8VU90
- Related
- ENSMUSP00000112797.2, ENSMUST00000120725.2
- Conserved Domains (6) summary
-
- cd10454
Location:352 → 464
- GIY-YIG_COG3680_Meta; GIY-YIG domain of hypothetical proteins from Metazoa
- cd00204
Location:26 → 128
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- pfam12796
Location:26 → 106
- Ank_2; Ankyrin repeats (3 copies)
- pfam13637
Location:76 → 128
- Ank_4; Ankyrin repeats (many copies)
- sd00045
Location:75 → 106
- ANK; ANK repeat [structural motif]
- cl02649
Location:265 → 302
- LEM; LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins
-
NM_172756.3 → NP_766344.2 ankyrin repeat and LEM domain-containing protein 1 isoform 1
See identical proteins and their annotated locations for NP_766344.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AK083552, BC094316, CJ046325, EU184014
- Consensus CDS
-
CCDS52583.1
- UniProtKB/Swiss-Prot
- A6H5W1, A8VU90, G5E8T1, Q8C4V5, Q8K2N6
- Related
- ENSMUSP00000113162.2, ENSMUST00000119976.8
- Conserved Domains (6) summary
-
- cd10454
Location:372 → 484
- GIY-YIG_COG3680_Meta; GIY-YIG domain of hypothetical proteins from Metazoa
- cd00204
Location:26 → 128
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- pfam12796
Location:26 → 106
- Ank_2; Ankyrin repeats (3 copies)
- pfam13637
Location:76 → 128
- Ank_4; Ankyrin repeats (many copies)
- sd00045
Location:75 → 106
- ANK; ANK repeat [structural motif]
- cl02649
Location:285 → 322
- LEM; LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000074.7 Reference GRCm39 C57BL/6J
- Range
-
71858630..71868475
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006509661.5 → XP_006509724.1 ankyrin repeat and LEM domain-containing protein 1 isoform X1
- Conserved Domains (4) summary
-
- PTZ00322
Location:60 → 139
- PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
- cd10454
Location:351 → 463
- GIY-YIG_COG3680_Meta; GIY-YIG domain of hypothetical proteins from Metazoa
- sd00045
Location:75 → 106
- ANK; ANK repeat [structural motif]
- cl02649
Location:264 → 301
- LEM; LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins
-
XM_030243488.2 → XP_030099348.1 ankyrin repeat and LEM domain-containing protein 1 isoform X2
- Conserved Domains (2) summary
-
- cd10454
Location:88 → 200
- GIY-YIG_COG3680_Meta; GIY-YIG domain of hypothetical proteins from Metazoa
- cl02649
Location:1 → 38
- LEM; LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins
-
XM_036153950.1 → XP_036009843.1 ankyrin repeat and LEM domain-containing protein 1 isoform X2
- Conserved Domains (2) summary
-
- cd10454
Location:88 → 200
- GIY-YIG_COG3680_Meta; GIY-YIG domain of hypothetical proteins from Metazoa
- cl02649
Location:1 → 38
- LEM; LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins