NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_027477.3 → NP_081753.1 zinc finger protein 398 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AK046208, AK078250, AK081169, BB066614
- Consensus CDS
-
CCDS20099.1
- UniProtKB/TrEMBL
- Q14DQ6, Q8BV16
- Related
- ENSMUSP00000078806.5, ENSMUST00000079881.11
- Conserved Domains (6) summary
-
- cd07765
Location:143 → 182
- KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
- smart00349
Location:143 → 203
- KRAB; krueppel associated box
- COG5048
Location:368 → 588
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:486 → 506
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:540 → 562
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:554 → 579
- zf-H2C2_2; Zinc-finger double domain
-
NM_173034.3 → NP_766622.2 zinc finger protein 398 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. It encodes isoform 2, which lacks an internal segment and is shorter, compared to isoform 1.
- Source sequence(s)
-
AK046208, AK078250, BB066614, BB640605
- Consensus CDS
-
CCDS39476.1
- UniProtKB/TrEMBL
- E9Q569, Q8BVH0
- Related
- ENSMUSP00000110245.2, ENSMUST00000114598.3
- Conserved Domains (4) summary
-
- smart00349
Location:11 → 71
- KRAB; krueppel associated box
- COG5048
Location:236 → 456
- COG5048; FOG: Zn-finger [General function prediction only]
- PRK05580
Location:211 → 244
- PRK05580; primosome assembly protein PriA; Validated
- sd00017
Location:354 → 374
- ZF_C2H2; C2H2 Zn finger [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000072.7 Reference GRCm39 C57BL/6J
- Range
-
47812567..47850476
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030255435.1 → XP_030111295.1 zinc finger protein 398 isoform X1
- UniProtKB/TrEMBL
-
Q8BVH0
- Conserved Domains (4) summary
-
- smart00349
Location:14 → 74
- KRAB; krueppel associated box
- COG5048
Location:239 → 459
- COG5048; FOG: Zn-finger [General function prediction only]
- PRK05580
Location:214 → 247
- PRK05580; primosome assembly protein PriA; Validated
- sd00017
Location:357 → 377
- ZF_C2H2; C2H2 Zn finger [structural motif]
-
XM_006506208.4 → XP_006506271.1 zinc finger protein 398 isoform X2
- UniProtKB/TrEMBL
-
Q8BVH0
- Conserved Domains (3) summary
-
- COG5048
Location:197 → 417
- COG5048; FOG: Zn-finger [General function prediction only]
- PRK05580
Location:172 → 205
- PRK05580; primosome assembly protein PriA; Validated
- sd00017
Location:315 → 335
- ZF_C2H2; C2H2 Zn finger [structural motif]