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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001037737.2 → NP_001032826.1 aryl hydrocarbon receptor nuclear translocator isoform a
See identical proteins and their annotated locations for NP_001032826.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) is the longer transcript and encodes the longer isoform (a).
- Source sequence(s)
-
AC092203, AK145415, AK153355, CJ183661
- Consensus CDS
-
CCDS17614.1
- UniProtKB/Swiss-Prot
- P53762, Q60661, Q921F3
- UniProtKB/TrEMBL
-
Q3U7X2
- Related
- ENSMUSP00000099810.5, ENSMUST00000102749.11
- Conserved Domains (5) summary
-
- smart00091
Location:166 → 230
- PAS; PAS domain
- cd00130
Location:362 → 458
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00010
Location:91 → 143
- HLH; Helix-loop-helix DNA-binding domain
- pfam00989
Location:163 → 269
- PAS; PAS fold
- pfam14598
Location:362 → 462
- PAS_11; PAS domain
-
NM_001409517.1 → NP_001396446.1 aryl hydrocarbon receptor nuclear translocator isoform c
Status: VALIDATED
- Source sequence(s)
-
AC092202, AC092203
- UniProtKB/TrEMBL
-
Q3U7X2
-
NM_001409518.1 → NP_001396447.1 aryl hydrocarbon receptor nuclear translocator isoform d
Status: VALIDATED
- Source sequence(s)
-
AC092202, AC092203
- UniProtKB/TrEMBL
-
Q3U7X2
-
NM_001409519.1 → NP_001396448.1 aryl hydrocarbon receptor nuclear translocator isoform e
Status: VALIDATED
- Source sequence(s)
-
AC092202, AC092203
- UniProtKB/TrEMBL
-
Q3U7X2
-
NM_001409520.1 → NP_001396449.1 aryl hydrocarbon receptor nuclear translocator isoform f
Status: VALIDATED
- Source sequence(s)
-
AC092202, AC092203
- UniProtKB/TrEMBL
- Q3U7X2, Q8CEC2
- Related
- ENSMUSP00000102779.2, ENSMUST00000107161.8
-
NM_001409522.1 → NP_001396451.1 aryl hydrocarbon receptor nuclear translocator isoform g
Status: VALIDATED
- Source sequence(s)
-
AC092202, AC092203
- UniProtKB/TrEMBL
-
Q5DTR2
-
NM_009709.4 → NP_033839.2 aryl hydrocarbon receptor nuclear translocator isoform b
See identical proteins and their annotated locations for NP_033839.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an internal coding exon, as compared to variant 1. The encoded isoform b lacks an internal segment, as compared to isoform a.
- Source sequence(s)
-
AC092203, AK145415, CJ183661
- Consensus CDS
-
CCDS38546.1
- UniProtKB/TrEMBL
- Q3U7X2, Q3ULM2
- Related
- ENSMUSP00000088313.6, ENSMUST00000090804.12
- Conserved Domains (5) summary
-
- smart00091
Location:151 → 215
- PAS; PAS domain
- cd00130
Location:347 → 443
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00010
Location:76 → 128
- HLH; Helix-loop-helix DNA-binding domain
- pfam00989
Location:148 → 254
- PAS; PAS fold
- pfam14598
Location:347 → 447
- PAS_11; PAS domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000069.7 Reference GRCm39 C57BL/6J
- Range
-
95341674..95404551
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006500933.4 → XP_006500996.1 aryl hydrocarbon receptor nuclear translocator isoform X5
- Conserved Domains (3) summary
-
- smart00091
Location:362 → 415
- PAS; PAS domain
- pfam00989
Location:163 → 269
- PAS; PAS fold
- cd18947
Location:86 → 150
- bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
-
XM_030252391.1 → XP_030108251.1 aryl hydrocarbon receptor nuclear translocator isoform X3
- UniProtKB/TrEMBL
-
Q5DTR2
- Conserved Domains (3) summary
-
- pfam00989
Location:97 → 203
- PAS; PAS fold
- pfam14598
Location:296 → 396
- PAS_11; PAS domain
- cd18947
Location:20 → 84
- bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
-
XM_030252392.1 → XP_030108252.1 aryl hydrocarbon receptor nuclear translocator isoform X4
- UniProtKB/TrEMBL
-
Q5DTR2
- Conserved Domains (3) summary
-
- pfam00989
Location:59 → 165
- PAS; PAS fold
- pfam14598
Location:258 → 358
- PAS_11; PAS domain
- cl00081
Location:1 → 46
- bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
-
XM_030252393.1 → XP_030108253.1 aryl hydrocarbon receptor nuclear translocator isoform X6
- UniProtKB/TrEMBL
-
Q3U7X2
- Conserved Domains (4) summary
-
- pfam00989
Location:161 → 267
- PAS; PAS fold
- pfam10428
Location:562 → 703
- SOG2; RAM signalling pathway protein
- pfam14598
Location:360 → 460
- PAS_11; PAS domain
- cd18947
Location:84 → 148
- bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
RNA
-
XR_001783643.3 RNA Sequence
-
XR_001783644.3 RNA Sequence