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    Gm19696 predicted gene, 19696 [ Mus musculus (house mouse) ]

    Gene ID: 100503447, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm19696provided by MGI
    Official Full Name
    predicted gene, 19696provided by MGI
    Primary source
    MGI:MGI:5011881
    See related
    Ensembl:ENSMUSG00000117485 AllianceGenome:MGI:5011881
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in duodenum adult (RPKM 2.6), liver adult (RPKM 2.3) and 9 other tissues See more
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    Genomic context

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    See Gm19696 in Genome Data Viewer
    Location:
    17 E4; 17 55.0 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (84441445..84463856, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (84134017..84156428, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 8430430B14 gene Neighboring gene STARR-seq mESC enhancer starr_43420 Neighboring gene STARR-positive B cell enhancer mm9_chr17:84427981-84428282 Neighboring gene predicted gene, 35551 Neighboring gene STARR-seq mESC enhancer starr_43421 Neighboring gene RIKEN cDNA 4933433H22 gene Neighboring gene STARR-positive B cell enhancer ABC_E2502 Neighboring gene STARR-positive B cell enhancer ABC_E10974 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:84518839-84519193 Neighboring gene predicted gene, 41640 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:84580066-84580358 Neighboring gene STARR-positive B cell enhancer ABC_E11651 Neighboring gene VISTA enhancer mm1108 Neighboring gene STARR-positive B cell enhancer mm9_chr17:84587213-84587514 Neighboring gene zinc finger protein 36, C3H type-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_168022.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC132455
      Related
      ENSMUST00000378446.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      84441445..84463856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_167663.1: Suppressed sequence

      Description
      NR_167663.1: This RefSeq was removed because it was annotated on the wrong strand.
    Nucleotide Protein Strain
    Heading Accession and Version

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