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    PALMD palmdelphin [ Homo sapiens (human) ]

    Gene ID: 54873, updated on 9-Dec-2024

    Summary

    Official Symbol
    PALMDprovided by HGNC
    Official Full Name
    palmdelphinprovided by HGNC
    Primary source
    HGNC:HGNC:15846
    See related
    Ensembl:ENSG00000099260 MIM:610182; AllianceGenome:HGNC:15846
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PALML; C1orf11
    Summary
    Predicted to be involved in regulation of cell shape. Predicted to be located in dendritic spine and membrane. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in fat (RPKM 87.9), heart (RPKM 29.7) and 13 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See PALMD in Genome Data Viewer
    Location:
    1p21.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (99646113..99694535)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (99494334..99542672)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (100111669..100160091)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene CXXC motif containing zinc binding protein-like Neighboring gene long intergenic non-protein coding RNA 1708 Neighboring gene MPRA-validated peak335 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:99980474-99981260 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:100025794-100026017 Neighboring gene Sharpr-MPRA regulatory region 14613 Neighboring gene Sharpr-MPRA regulatory region 10093 Neighboring gene high mobility group box 3 pseudogene 10 Neighboring gene ferric chelate reductase 1 Neighboring gene Sharpr-MPRA regulatory region 5706 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1358

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ20271

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in dendritic spine IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    palmdelphin
    Names
    paralemmin-like protein
    paralemnin-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_017734.5NP_060204.1  palmdelphin

      See identical proteins and their annotated locations for NP_060204.1

      Status: VALIDATED

      Source sequence(s)
      AF262379, AL390970
      Consensus CDS
      CCDS758.1
      UniProtKB/Swiss-Prot
      Q9H7E6, Q9NP74, Q9NPM5, Q9NPM6, Q9NPS0
      UniProtKB/TrEMBL
      A0A0S2Z5E7, S4R313
      Related
      ENSP00000263174.4, ENST00000263174.9
      Conserved Domains (1) summary
      pfam03285
      Location:78447
      Paralemmin; Paralemmin

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      99646113..99694535
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      99494334..99542672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)